Genes in panel

Hereditary neuropathy or pain disorder

Gene: FA2H

Green List (high evidence)

FA2H (fatty acid 2-hydroxylase)
EnsemblGeneIds (GRCh38): ENSG00000103089
EnsemblGeneIds (GRCh37): ENSG00000103089
OMIM: 611026, Gene2Phenotype
FA2H is in 17 panels

4 reviews

Sarah Leigh (Genomics England Curator)

Green List (high evidence)

The rating of this gene has been updated to green following NHS Genomic Medicine Service approval.
Created: 24 Feb 2025, 5:02 p.m. | Last Modified: 24 Feb 2025, 5:02 p.m.
Panel Version: 6.148

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Eleanor Williams (Genomics England Curator)

Comment on list classification: Promoting with amber with a recommendation for green rating as there are now 4 cases with peripheral neuropathy and variants in this gene reported.
Created: 26 Oct 2024, 9:45 p.m. | Last Modified: 26 Oct 2024, 9:45 p.m.
Panel Version: 5.98
Associated with Spastic paraplegia 35, autosomal recessive in OMIM (OMIM:612319)

Peripheral neuropathy reported in 4 cases - 1 from PubMed:22146942 and 3 from PubMed:31135052

PubMed:22146942 - Pierson et al 2012 - describe a 10-year-old male, from a non-consanguineous family, with progressive spastic paraplegia, dystonia, ataxia, and cognitive decline associated with a sural axonal neuropathy. The patient has a paternally derived missense mutation and an overlapping novel maternally derived ~28-kb genomic deletion in FA2H.

PubMed:31135052 - Rattay et al 2019 - studied 19 cases from 16 families with biallelic FA2H mutations resulting in hereditary spastic paraplegia (HSP) type SPG35. Variants in FA2H were identified by Sanger sequencing, a next generation sequencing (NGS)-based HSP gene panel and whole exome sequencing. Truncating variants and missense variants were identified. Gait problems started almost invariably in early childhood at a median age of 4 years. Lower limb predominant spastic tetraparesis accompanied by truncal instability, dysarthria, dysphagia, cerebellar ataxia, and cognitive deficits were present in ∼90% of cases. Peripheral neuropathy was present in 27% (3/11) of cases.
Created: 26 Oct 2024, 9:43 p.m. | Last Modified: 26 Oct 2024, 9:43 p.m.
Panel Version: 5.97

Phenotypes
Spastic paraplegia 35, autosomal recessive, OMIM:612319; hereditary spastic paraplegia 35, MONDO:0012866

Publications

Louise Daugherty (Genomics England Curator)

I don't know

Review and rating uploaded from file (Curation_Template_GMS_Neuro_AR_20190521.xlsx) submitted by Alex Rossor (UCL Institute of Neurology) on behalf of London North GLH for GMS Neurology specialist test group.
Created: 11 Jun 2019, 1:40 p.m.

Alexander Rossor (UCL Institute of Neurology)

Green List (high evidence)

peripheral neuropathy now reportedin 3 additional patients
Created: 19 Oct 2024, 10:34 p.m. | Last Modified: 19 Oct 2024, 10:34 p.m.
Panel Version: 5.19

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
SPG35, Childhood onset spasticity, cognitive decline and leukodystrophy. Mild sensory axonal neuropathy on NCS. Epilepsy, dysphagia, dysarthria and dystonia also observed.

Publications

History Filter Activity

24 Feb 2025, Gel status: 3

Removed Tag, Removed Tag

Sarah Leigh (Genomics England Curator)

Tag Q3_24_promote_green was removed from gene: FA2H. Tag Q3_24_NHS_review was removed from gene: FA2H.

24 Feb 2025, Gel status: 3

Added New Source, Status Update

Sarah Leigh (Genomics England Curator)

Source Expert Review Green was added to FA2H. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)

26 Oct 2024, Gel status: 2

Set Phenotypes

Eleanor Williams (Genomics England Curator)

Phenotypes for gene: FA2H were changed from SPG35, Childhood onset spasticity, cognitive decline and leukodystrophy. Mild sensory axonal neuropathy on NCS. Epilepsy, dysphagia, dysarthria and dystonia also observed; Spastic paraplegia 35, autosomal recessive, 612319 to Spastic paraplegia 35, autosomal recessive, OMIM:612319; hereditary spastic paraplegia 35, MONDO:0012866

26 Oct 2024, Gel status: 2

Set publications

Eleanor Williams (Genomics England Curator)

Publications for gene: FA2H were set to 22146942

26 Oct 2024, Gel status: 2

Added Tag, Added Tag

Eleanor Williams (Genomics England Curator)

Tag Q3_24_promote_green tag was added to gene: FA2H. Tag Q3_24_NHS_review tag was added to gene: FA2H.

26 Oct 2024, Gel status: 2

Entity classified by Genomics England curator

Eleanor Williams (Genomics England Curator)

Gene: fa2h has been classified as Amber List (Moderate Evidence).

5 Dec 2019, Gel status: 1

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes

Ellen McDonagh (Genomics England Curator)

gene: FA2H was added gene: FA2H was added to Hereditary neuropathy NOT PMP22 copy number. Sources: NHS GMS,London North GLH Mode of inheritance for gene: FA2H was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: FA2H were set to 22146942 Phenotypes for gene: FA2H were set to SPG35, Childhood onset spasticity, cognitive decline and leukodystrophy. Mild sensory axonal neuropathy on NCS. Epilepsy, dysphagia, dysarthria and dystonia also observed; Spastic paraplegia 35, autosomal recessive, 612319