Genes in panel

Hereditary neuropathy or pain disorder

Gene: MT-ND6

Red List (low evidence)

MT-ND6 (mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6)
EnsemblGeneIds (GRCh38): ENSG00000198695
EnsemblGeneIds (GRCh37): ENSG00000198695
OMIM: 516006, Gene2Phenotype
MT-ND6 is in 15 panels

2 reviews

Achchuthan Shanmugasundram (Genomics England Curator)

Red List (low evidence)

As reviewed by Dmitrijs Rots, MT-ND6 is associated with Leber hereditary optic neuropathy (LHON) and GeneReviews (PMID:20301353) states that it includes neurological abnormalities including peripheral neuropathy. Review of cited publications from GeneReviews (PMIDs:17724295 & 27111573) showed that patients with MT-ND6 variants presented with dystonia and other movement disorders. I cannot find any association to peripheral neuropathy in these publications.

However, PMID:38975939 reported the identification of a homoplasmic variant in MT-ND6 gene (p.Met64Val) in a patient with chronic progressive ataxic neuropathy.

This gene has not been associated with any relevant phenotypes in OMIM or in Gen2Phenotype. In addition, this gene is not associated with any of the hereditary neuropathy panels in PanelApp Australia.

Hence, this gene should only be rated red with the available evidence.
Created: 14 Nov 2024, 2:10 p.m. | Last Modified: 14 Nov 2024, 2:10 p.m.
Panel Version: 6.131

Mode of inheritance
MITOCHONDRIAL

Publications

Dmitrijs Rots (Children's Clinical University Hospital)

Green List (high evidence)

Gene is associated with LHON, but GeneReviews states: "Neurologic abnormalities such as postural tremor, peripheral neuropathy, nonspecific myopathy, and movement disorders have been reported to be more common in individuals with LHON than in the general population. ".
Identified in our lab in a young patient with peripheral neuropathy phenotype only.
Sources: Literature
Created: 20 Oct 2023, 6:14 p.m.

Mode of inheritance
MITOCHONDRIAL

Phenotypes
LHON; peripheral neuropathy

Publications

Mode of pathogenicity
Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments

History Filter Activity

14 Nov 2024, Gel status: 1

Entity classified by Genomics England curator

Achchuthan Shanmugasundram (Genomics England Curator)

Gene: mt-nd6 has been classified as Red List (Low Evidence).

14 Nov 2024, Gel status: 0

Set publications

Achchuthan Shanmugasundram (Genomics England Curator)

Publications for gene: MT-ND6 were set to PMID: 20301353

14 Nov 2024, Gel status: 0

Set Phenotypes

Achchuthan Shanmugasundram (Genomics England Curator)

Phenotypes for gene: MT-ND6 were changed from LHON; peripheral neuropathy to Leber hereditary optic neuropathy

20 Oct 2023, Gel status: 0

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes, Set penetrance, Set mode of pathogenicity

Dmitrijs Rots (Children's Clinical University Hospital)

gene: MT-ND6 was added gene: MT-ND6 was added to Hereditary neuropathy or pain disorder. Sources: Literature Mode of inheritance for gene gene: MT-ND6 was set to MITOCHONDRIAL Publications for gene: MT-ND6 were set to PMID: 20301353 Phenotypes for gene: MT-ND6 were set to LHON; peripheral neuropathy Penetrance for gene: MT-ND6 were set to unknown Mode of pathogenicity for gene: MT-ND6 was set to Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments Review for gene: MT-ND6 was set to GREEN