Hereditary neuropathy
Gene: RETREG1EnsemblGeneIds (GRCh38): ENSG00000154153
EnsemblGeneIds (GRCh37): ENSG00000154153
OMIM: 613114, Gene2Phenotype
RETREG1 is in 9 panels
8 reviews
Natalie Forrester (SWGLH - Bristol Genetics)
Bristol - no pathogenic or likely pathogenic variants out of approx.1900 patients tested. PMID:30373780 - most recent paper with a homozygous frameshift variant in patient with specific and consistent features. PMID: 19838196 - four unrelated HSAN II families carrying homozygous loss-offunction FAM134B mutations.Created: 29 Apr 2019, 12:30 p.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Hereditary Sensory and Autonomic Neuropathy, Type II ; Neuropathy, hereditary sensory and autonomic, type IIB, 613115 ; Neuropathy, hereditary sensory and autonomic, type IIB, 613115
Publications
Variants in this GENE are reported as part of current diagnostic practice
James Polke (Neurogenetics Laboratory, Institute of Neurology, London)
Variants in this GENE are reported as part of current diagnostic practice
Rita Horvath (Institute of Genetic Medicine, Newcastle University)
Variants in this GENE are reported as part of current diagnostic practice
Alexander Rossor (UCL Institute of Neurology)
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Variants in this GENE are reported as part of current diagnostic practice
Mary Reilly (Institute of Neurology)
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Variants in this GENE are reported as part of current diagnostic practice
Louise Daugherty (Genomics England Curator)
Rating and review submitted on behalf of James Polke (Neurogenetics Laboratory,Institute of Neurology, London), on behalf of London North GLH for GMS Neurology specialist test group.Created: 9 May 2019, 5 p.m.
Review and rating submitted by Natalie Forrester (SWGLH - Bristol Genetics) on behalf of South West GLH for GMS Neurology specialist test group.Created: 29 Apr 2019, 12:53 p.m.
New approved gene symbol is RETREG1Created: 24 Mar 2017, 10:39 a.m.
Ellen McDonagh (Genomics England Curator)
Comment on list classification: Discussed internally and as three reviewers rated the gene green and are currently reporting variants in this gene, it should be green.Created: 10 May 2016, 10:54 a.m.
Comment on list classification: Demoted from green to amber due to the comment by Thalia Antoniadi (West Midlands Regional Genetics Laboratory).Created: 3 May 2016, 4:10 p.m.
Thalia Antoniadi (West Midlands Regional Genetics Laboratory)
The gene was added in the UKGTN approved panel because it had an OMIM entry associated with CMT. Following testing of 480 patients, no patient was found with pathogenic variants, and the gene is quite polymorphic, so variant classification was a particular problem. This gene should be amber.Created: 7 Oct 2015, 10:48 a.m.
Publications
- PMID: 26392352
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- South West GLH
- NHS GMS
- London North GLH
- Expert Review Green
- Emory Genetics Laboratory
- Radboud University Medical Center, Nijmegen
- UKGTN
- Illumina TruGenome Clinical Sequencing Services
- Expert list
- Phenotypes
-
- Hereditary Sensory and Autonomic Neuropathy, Type II
- Hereditary Sensory and Autonomic Neuropathy, Type II
- Neuropathy, hereditary sensory and autonomic, type IIB, 613115
- Neuropathy, hereditary sensory and autonomic, type IIB, 613115
- OMIM
- 613114
- Clinvar variants
- Variants in RETREG1
- Penetrance
- Complete
- Publications
- Panels with this gene
History Filter Activity
Set Phenotypes, Set publications
Louise Daugherty (Genomics England Curator)Added phenotypes Hereditary Sensory and Autonomic Neuropathy, Type II; Neuropathy, hereditary sensory and autonomic, type IIB, 613115 for gene: RETREG1 Publications for gene RETREG1 were changed from PMID: 26392352 to 30373780; 19838196
Added New Source
Louise Daugherty (Genomics England Curator)Source South West GLH was added to RETREG1.
Added New Source
Louise Daugherty (Genomics England Curator)Source NHS GMS was added to RETREG1.
Added New Source
Louise Daugherty (Genomics England Curator)Source London North GLH was added to RETREG1.
Changed Gene Name
GEL ()FAM134B was changed to RETREG1
Removed Tag
GEL ()new-gene-name was removed from FAM134B. Panel: Charcot-Marie-Tooth disease
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Set publications
Ellen McDonagh (Genomics England Curator)Publications for FAM134B were set to PMID: 26392352
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Amber List (Moderate Evidence).
Set Mode of Inheritance
Ellen McDonagh (Genomics England Curator)Model of inheritance for gene FAM134B was changed to BIALLELIC, autosomal or pseudoautosomal
Set Mode of Inheritance
Ellen McDonagh (Genomics England Curator)Model of inheritance for gene FAM134B was changed to BIALLELIC, autosomal or pseudoautosomal
Set Mode of Inheritance
Ellen McDonagh (Genomics England Curator)Model of inheritance for gene FAM134B was changed to BIALLELIC, autosomal or pseudoautosomal
Set Mode of Inheritance
Ellen McDonagh (Genomics England Curator)Model of inheritance for gene FAM134B was changed to BIALLELIC, autosomal or pseudoautosomal
Set Mode of Inheritance
Ellen McDonagh (Genomics England Curator)Model of inheritance for gene FAM134B was changed to BIALLELIC, autosomal or pseudoautosomal
Set Mode of Inheritance
Ellen McDonagh (Genomics England Curator)Model of inheritance for gene FAM134B was changed to BIALLELIC, autosomal or pseudoautosomal
Added New Source
Ellen McDonagh (Genomics England Curator)FAM134B was added to Charcot-Marie-Tooth diseasepanel. Sources: Expert list,Illumina TruGenome Clinical Sequencing Services,UKGTN,Radboud University Medical Center, Nijmegen,Emory Genetics Laboratory
Set Mode of Inheritance
Ellen McDonagh (Genomics England Curator)Model of inheritance for gene FAM134B was changed to BIALLELIC, autosomal or pseudoautosomal
Added New Source
Ellen McDonagh (Genomics England Curator)FAM134B was added to Charcot-Marie-Tooth diseasepanel. Sources: Expert list,Illumina TruGenome Clinical Sequencing Services,UKGTN,Radboud University Medical Center, Nijmegen,Emory Genetics Laboratory
Set Mode of Inheritance
Ellen McDonagh (Genomics England Curator)Model of inheritance for gene FAM134B was changed to BIALLELIC, autosomal or pseudoautosomal
Added New Source
Ellen McDonagh (Genomics England Curator)FAM134B was added to Charcot-Marie-Tooth diseasepanel. Sources: Expert list,Illumina TruGenome Clinical Sequencing Services,UKGTN,Radboud University Medical Center, Nijmegen,Emory Genetics Laboratory
Set Mode of Inheritance
Ellen McDonagh (Genomics England Curator)Model of inheritance for gene FAM134B was changed to BIALLELIC, autosomal or pseudoautosomal
Added New Source
Ellen McDonagh (Genomics England Curator)FAM134B was added to Charcot-Marie-Tooth diseasepanel. Sources: Expert list,Illumina TruGenome Clinical Sequencing Services,UKGTN,Radboud University Medical Center, Nijmegen,Emory Genetics Laboratory
Added New Source
Ellen McDonagh (Genomics England Curator)FAM134B was added to Charcot-Marie-Tooth diseasepanel. Sources: Expert list,Illumina TruGenome Clinical Sequencing Services,UKGTN,Radboud University Medical Center, Nijmegen,Emory Genetics Laboratory