Genes in panel
- AAAS 1
- ABAT 1
- ABCB7 1
- ABCC9 1
- ABCD1 1
- ABHD12 1
- ABHD5 1
- ACAD9 1
- ACADM 1
- ACADS 1
- ACADVL 1
- ACAT1 1
- ACOX1 1
- ACTB 1
- ACTG1 1
- ACY1 1
- ADAR 1
- ADCY5 1
- ADGRG1 2
- ADGRV1 2
- ADNP 1
- ADSL 1
- AFF2 1
- AFF4 1
- AFG3L2 1
- AGA 1
- AGK 1
- AGL 1
- AGPS 1
- AGXT 1
- AHDC1 1
- AIRE 1
- AKR1D1 1
- AKT1 1
- ALAD 1
- ALDH18A1 1
- ALDH1A3 1
- ALDH3A2 1
- ALDH4A1 1
- ALDH5A1 1
- ALDH7A1 1
- ALDOA 1
- ALDOB 1
- ALG1 1
- ALG12 1
- ALG3 1
- ALG6 1
- ALG8 1
- ALMS1 1
- ALPL 1
- ALS2 1
- ALX1 1
- ALX3 1
- AMER1 2
- AMPD2 1
- AMT 1
- ANKH 1
- ANKRD11 1
- ANO10 1
- ANO3 1
- ANO5 1
- ANTXR1 1
- AP1S2 1
- AP4B1 1
- AP4E1 1
- AP4M1 1
- AP4S1 1
- AP5Z1 1
- APOPT1 2
- APTX 1
- AR 1
- ARFGEF2 1
- ARG1 1
- ARHGEF9 1
- ARID1A 1
- ARID1B 1
- ARL6 1
- ARSA 1
- ARSB 1
- ARSE 2
- ARX 1
- ASAH1 1
- ASL 1
- ASPA 1
- ASPM 1
- ASS1 1
- ASXL1 1
- ATCAY 1
- ATIC 1
- ATL1 1
- ATM 1
- ATN1 1
- ATP13A2 1
- ATP1A3 1
- ATP6AP2 1
- ATP7A 1
- ATP7B 1
- ATP8B1 1
- ATRX 1
- ATXN1 1
- ATXN10 1
- ATXN2 1
- ATXN3 1
- ATXN7 1
- AUH 1
- AUTS2 1
- B3GALT6 1
- B4GALNT1 1
- B4GALT7 1
- BBS1 1
- BBS10 1
- BBS12 1
- BBS2 1
- BBS4 1
- BBS5 1
- BBS7 1
- BBS9 1
- BCAP31 1
- BCKDHA 1
- BCKDHB 1
- BCL11A 1
- BCOR 1
- BCS1L 1
- BEAN1 1
- BICD2 1
- BIN1 1
- BLM 1
- BMP4 1
- BMPER 1
- BRAF 1
- BRAT1 1
- BRCA1 1
- BRCA2 1
- BRIP1 1
- BRWD3 1
- BSCL2 1
- BSND 1
- BTD 1
- BUB1B 1
- C12orf65 2
- C19orf12 1
- C2orf71 2
- C5orf42 2
- C9orf72 1
- CA2 1
- CA8 1
- CACNA1A 1
- CACNA1S 1
- CACNB4 1
- CAMTA1 1
- CASK 1
- CASR 1
- CBL 1
- CBS 1
- CC2D1A 1
- CC2D2A 1
- CCBE1 1
- CCDC39 1
- CCDC88C 1
- CCND2 1
- CCT5 1
- CDC6 1
- CDH15 1
- CDK5RAP2 1
- CDKL5 1
- CDKN1C 1
- CDON 1
- CDT1 1
- CENPJ 1
- CEP152 1
- CEP290 1
- CEP41 1
- CEP57 1
- CHAMP1 1
- CHD2 1
- CHD7 1
- CHRNA2 1
- CHRNA4 1
- CHRNB2 1
- CHRNG 1
- CHST14 1
- CHST3 1
- CHUK 1
- CIB2 1
- CISD2 1
- CKAP2L 1
- CLCN2 1
- CLDN19 1
- CLN3 1
- CLN5 1
- CLN6 1
- CLN8 1
- CLPB 1
- CNTNAP2 1
- COASY 1
- COG1 1
- COG4 1
- COG7 1
- COG8 1
- COL11A2 1
- COL1A1 1
- COL2A1 1
- COL4A1 1
- COL4A2 1
- COL4A3BP 2
- COL9A3 1
- COLEC11 1
- COQ2 1
- COQ8A 1
- COQ9 1
- COX10 1
- COX15 1
- COX6B1 1
- COX7B 1
- CP 1
- CPA6 1
- CPS1 1
- CRB1 1
- CRB2 1
- CREBBP 1
- CSF1R 1
- CSPP1 1
- CSTB 1
- CTC1 1
- CTCF 1
- CTDP1 1
- CTNNB1 1
- CTNS 1
- CTSA 1
- CTSD 1
- CUL4B 1
- CUL7 1
- CYC1 1
- CYP27A1 1
- CYP2U1 1
- CYP7B1 1
- DAG1 1
- DARS 2
- DARS2 1
- DBT 1
- DCHS1 1
- DCTN1 1
- DCX 1
- DDC 1
- DDHD1 1
- DDHD2 1
- DDOST 1
- DDR2 1
- DDX11 1
- DDX3X 1
- DEAF1 1
- DEPDC5 1
- DHCR24 1
- DHCR7 1
- DHFR 1
- DIS3L2 1
- DKC1 1
- DLAT 1
- DLD 1
- DLG3 1
- DMD 1
- DMP1 1
- DMPK 1
- DNM2 1
- DNMT1 1
- DNMT3A 1
- DNMT3B 1
- DOCK8 1
- DOLK 1
- DPAGT1 1
- DPM1 1
- DRD2 1
- DYM 1
- DYNC1H1 1
- DYRK1A 1
- EBP 1
- EDNRB 1
- EFHC1 1
- EFNB1 1
- EFTUD2 1
- EGR2 1
- EHMT1 1
- EIF2AK3 1
- EIF4G1 1
- ELAC2 1
- ELOVL4 1
- ELOVL5 1
- EP300 1
- EPG5 1
- EPM2A 1
- ERCC1 1
- ERCC2 1
- ERCC3 1
- ERCC4 1
- ERCC5 1
- ERCC6 1
- ERCC6L2 1
- ERCC8 1
- ERLIN2 1
- ESCO2 1
- ETFA 1
- ETFB 1
- ETFDH 1
- ETHE1 1
- EVC 1
- EVC2 1
- EXOSC3 1
- EXT1 1
- EYA1 1
- EZH2 1
- FA2H 1
- FAH 1
- FAM111A 1
- FAM111B 1
- FAM126A 1
- FAM20C 1
- FANCA 1
- FANCC 1
- FANCD2 1
- FANCE 1
- FAR1 1
- FAT4 1
- FBN1 1
- FBN2 1
- FBP1 1
- FBXL4 1
- FBXO7 1
- FGD1 1
- FGD4 1
- FGF14 1
- FGF3 1
- FGFR1 1
- FGFR2 1
- FGFR3 1
- FH 1
- FHL1 1
- FIG4 1
- FKBP14 1
- FKRP 1
- FKTN 1
- FLNA 1
- FLNB 1
- FLVCR1 1
- FLVCR2 1
- FMR1 1
- FOLR1 1
- FOXG1 1
- FOXP1 1
- FOXP3 1
- FOXRED1 1
- FRAS1 1
- FREM1 1
- FREM2 1
- FRMD7 1
- FTCD 2
- FTL 1
- FTSJ1 1
- FUCA1 1
- FXN 1
- GAA 1
- GABRA1 1
- GABRB3 1
- GABRG2 1
- GAD1 1
- GALC 1
- GALE 1
- GALK1 1
- GALNS 1
- GALT 1
- GAMT 1
- GATA6 1
- GATM 1
- GBA 1
- GBA2 1
- GCDH 1
- GCH1 1
- GDAP1 1
- GDI1 1
- GFAP 1
- GFM1 1
- GHR 1
- GJA1 1
- GJB1 1
- GJC2 1
- GK 1
- GLB1 1
- GLDC 1
- GLE1 1
- GLI2 1
- GLI3 1
- GLIS3 1
- GLUD1 1
- GLUL 1
- GM2A 1
- GMPPA 1
- GMPPB 1
- GNAL 1
- GNAO1 1
- GNAS 1
- GNPAT 1
- GNPTAB 1
- GNPTG 1
- GNS 1
- GOSR2 1
- GPSM2 1
- GRIA3 1
- GRID2 1
- GRIK2 1
- GRIN2A 1
- GRIN2B 1
- GRM1 1
- GRN 1
- GTF2H5 1
- GTPBP3 1
- GUSB 1
- HADH 1
- HADHA 1
- HAX1 1
- HCCS 1
- HCFC1 1
- HCN1 1
- HDAC4 1
- HDAC8 1
- HEXA 1
- HEXB 1
- HGSNAT 1
- HIBCH 1
- HINT1 1
- HK1 1
- HLCS 1
- HMGCL 1
- HMGCS2 1
- HNF1B 1
- HNF4A 1
- HNRNPU 1
- HOXA1 1
- HPRT1 1
- HRAS 1
- HSD17B10 1
- HSD17B4 1
- HSD3B7 1
- HSPD1 1
- HSPG2 1
- HTT 1
- HUWE1 1
- HYAL1 1
- HYLS1 1
- IDS 1
- IDUA 1
- IER3IP1 1
- IFIH1 1
- IFT140 1
- IFT172 1
- IGF1 1
- IGF1R 1
- IGF2 1
- IGHMBP2 1
- IGSF1 1
- IKBKG 1
- IL1RAPL1 1
- INPP5E 1
- IQSEC2 1
- ISPD 2
- ITGA7 1
- ITPR1 1
- IVD 1
- KANSL1 1
- KARS 2
- KAT6A 1
- KAT6B 1
- KBTBD13 1
- KCNA1 1
- KCNA2 1
- KCNB1 1
- KCNC1 1
- KCNC3 1
- KCND3 1
- KCNJ10 1
- KCNJ11 1
- KCNQ2 1
- KCNQ3 1
- KCNT1 1
- KCTD7 1
- KDM5C 1
- KDM6A 1
- KIF11 1
- KIF1A 1
- KIF1BP 2
- KIF1C 1
- KIF5A 1
- KIF7 1
- KIRREL3 1
- KLHL40 1
- KMT2A 1
- KMT2B 1
- KMT2D 1
- KNL1 1
- KRAS 1
- KRIT1 1
- L1CAM 1
- L2HGDH 1
- LAMA1 1
- LAMA2 1
- LAMC3 1
- LAMP2 1
- LARGE1 1
- LBR 1
- LDB3 1
- LGI1 1
- LHX3 1
- LHX4 1
- LIG4 1
- LITAF 1
- LMBRD1 1
- LMNA 1
- LRP2 1
- LRP5 1
- LRPPRC 1
- LRRK2 1
- LYST 1
- MAB21L2 1
- MAF 1
- MAGEL2 1
- MAN2B1 1
- MANBA 1
- MAOA 1
- MAP2K1 1
- MAP2K2 1
- MAPT 1
- MARS2 1
- MASP1 1
- MC2R 1
- MCCC1 1
- MCCC2 1
- MCEE 1
- MCOLN1 1
- MCPH1 1
- MECP2 1
- MED12 1
- MED17 1
- MEF2C 1
- MEGF10 1
- MEGF8 1
- MFSD8 1
- MGAT2 1
- MGP 1
- MICU1 1
- MID1 1
- MITF 1
- MKKS 1
- MKS1 1
- MLC1 1
- MLYCD 1
- MMAA 1
- MMAB 1
- MMACHC 1
- MMADHC 1
- MNX1 1
- MOCS1 1
- MOCS2 1
- MPDU1 1
- MPI 1
- MPLKIP 1
- MPV17 1
- MPZ 1
- MRE11 2
- MT-ATP6 1
- MTHFR 1
- MTM1 1
- MTMR2 1
- MT-ND1 1
- MT-ND4 1
- MTO1 1
- MTPAP 1
- MTR 1
- MTRR 1
- MT-TK 1
- MTTP 1
- MUT 2
- MYBPC1 1
- MYCN 1
- MYH3 1
- MYO5A 1
- MYO7A 1
- NAA10 1
- NAGA 1
- NAGLU 1
- NAGS 1
- NALCN 1
- NBN 1
- NDE1 1
- NDP 1
- NDRG1 1
- NDUFA1 1
- NDUFS1 1
- NDUFS4 1
- NDUFS7 1
- NDUFS8 1
- NDUFV1 1
- NEFL 1
- NEU1 1
- NEXMIF 2
- NF1 1
- NFIX 1
- NFU1 1
- NGLY1 1
- NHEJ1 1
- NHLRC1 1
- NHS 1
- NIPA1 1
- NIPBL 1
- NKX2-1 1
- NKX2-5 1
- NOP56 1
- NPC1 1
- NPC2 1
- NPHP1 1
- NR2F1 1
- NRAS 1
- NSD1 1
- NSDHL 1
- NT5C2 1
- NTRK1 1
- NUBPL 1
- OBSL1 1
- OCRL 1
- OFD1 1
- OPA3 1
- OPHN1 1
- ORC1 1
- ORC4 1
- ORC6 1
- OTC 1
- OTX2 1
- OXCT1 1
- P3H1 2
- PACS1 1
- PAFAH1B1 1
- PAH 1
- PAK3 1
- PALB2 1
- PANK2 1
- PAPSS2 1
- PARK7 1
- PAX2 1
- PAX6 1
- PAX8 1
- PC 1
- PCBD1 1
- PCCA 1
- PCCB 1
- PCDH19 1
- PCNT 1
- PDCD10 1
- PDE4D 1
- PDGFB 1
- PDGFRB 1
- PDHA1 1
- PDHX 1
- PDSS2 1
- PDYN 1
- PEPD 1
- PEX1 1
- PEX10 1
- PEX12 1
- PEX13 1
- PEX14 1
- PEX16 1
- PEX19 1
- PEX2 1
- PEX26 1
- PEX3 1
- PEX5 1
- PEX6 1
- PEX7 1
- PGAP1 1
- PGAP2 1
- PGAP3 1
- PGK1 1
- PGM1 1
- PHF6 1
- PHF8 1
- PHGDH 1
- PHOX2B 1
- PIEZO2 1
- PIGA 1
- PIGL 1
- PIGN 1
- PIGO 1
- PIGV 1
- PIK3CA 1
- PIK3R1 1
- PIK3R2 1
- PINK1 1
- PITX3 1
- PLA2G6 1
- PLCB1 1
- PLEC 1
- PLK4 1
- PLOD1 1
- PLP1 1
- PMM2 1
- PMP22 1
- PNKD 1
- PNKP 1
- PNPLA6 1
- PNPO 1
- PNPT1 1
- POC1A 1
- POGZ 1
- POLG 1
- POLR3A 1
- POLR3B 1
- POMGNT1 1
- POMGNT2 1
- POMT1 1
- POMT2 1
- PORCN 1
- POU1F1 1
- PPP2R1A 1
- PPP2R2B 1
- PPP2R5D 1
- PPT1 1
- PQBP1 1
- PRICKLE1 1
- PRICKLE2 1
- PRKAR1A 1
- PRKCG 1
- PRKN 2
- PRKRA 1
- PROP1 1
- PRPS1 1
- PRRT2 1
- PRSS12 1
- PRX 1
- PSAP 1
- PSEN1 1
- PSMB8 1
- PSPH 1
- PTCH1 1
- PTCHD1 1
- PTDSS1 1
- PTEN 1
- PTF1A 1
- PTH1R 1
- PTPN11 1
- PTS 1
- PURA 1
- PYCR1 1
- QARS 2
- QDPR 1
- RAB18 1
- RAB23 1
- RAB39B 1
- RAB3GAP1 1
- RAB3GAP2 1
- RAD21 1
- RAF1 1
- RAI1 1
- RAPSN 1
- RARB 1
- RARS2 1
- RAX 1
- RBM8A 1
- RECQL4 1
- REEP1 1
- REEP2 1
- RELN 1
- RET 1
- RETREG1 2
- RFX6 1
- RNASEH2A 1
- RNASEH2B 1
- RNASEH2C 1
- RNASET2 1
- RNF216 1
- RNU4ATAC 1
- ROGDI 1
- ROR2 1
- RPGRIP1L 1
- RPS6KA3 1
- RTEL1 1
- RTN2 1
- RTTN 1
- RYR1 1
- SACS 1
- SALL1 1
- SAMHD1 1
- SATB2 1
- SBDS 1
- SBF2 1
- SC5D 1
- SCARB2 1
- SCN11A 1
- SCN1A 1
- SCN1B 1
- SCN2A 1
- SCN4A 1
- SCN8A 1
- SCN9A 1
- SCO1 1
- SCO2 1
- SDHA 1
- SDHAF1 1
- SETBP1 1
- SETD5 1
- SETX 1
- SF3B4 1
- SGCE 1
- SGSH 1
- SH3TC2 1
- SHANK3 1
- SHH 1
- SHOC2 1
- SIGMAR1 1
- SIK1 1
- SIL1 1
- SIX3 1
- SKI 1
- SLC12A6 1
- SLC13A5 1
- SLC16A2 1
- SLC17A5 1
- SLC19A3 1
- SLC20A2 1
- SLC22A5 1
- SLC25A15 1
- SLC25A20 1
- SLC25A22 1
- SLC2A1 1
- SLC2A10 1
- SLC2A2 1
- SLC33A1 1
- SLC35A2 1
- SLC35C1 1
- SLC46A1 1
- SLC4A1 1
- SLC4A4 1
- SLC52A3 1
- SLC5A5 1
- SLC6A1 1
- SLC6A17 1
- SLC6A19 1
- SLC6A3 1
- SLC6A5 1
- SLC6A8 1
- SLC9A6 1
- SLX4 1
- SMARCA2 1
- SMARCA4 1
- SMARCAL1 1
- SMARCB1 1
- SMC1A 1
- SMOC1 1
- SMPD1 1
- SNCA 1
- SNRPB 1
- SNX14 1
- SOS1 1
- SOX10 1
- SOX2 1
- SOX3 1
- SPART 2
- SPAST 1
- SPEG 1
- SPG11 1
- SPG21 1
- SPG7 1
- SPR 1
- SPRED1 1
- SPTAN1 1
- SPTBN2 1
- SPTLC2 1
- SRCAP 1
- SRD5A3 1
- ST3GAL3 1
- ST3GAL5 1
- STAMBP 1
- STIL 1
- STRA6 1
- STRADA 1
- STS 1
- STUB1 1
- STX1B 1
- STXBP1 1
- SUCLG1 1
- SUMF1 1
- SURF1 1
- SYNE1 1
- SYNGAP1 1
- SYNJ1 1
- SYP 1
- TAF1 1
- TARDBP 1
- TAT 1
- TAZ 1
- TBC1D24 1
- TBCE 1
- TBP 1
- TBX1 1
- TBX3 1
- TCF4 1
- TCOF1 1
- TECPR2 1
- TFAP2A 1
- TFAP2B 1
- TFG 1
- TGFBR1 1
- TGIF1 1
- TGM6 1
- TH 1
- THAP1 1
- THRA 1
- TIMM8A 1
- TK2 1
- TMCO1 1
- TMEM165 1
- TMEM237 1
- TMEM240 1
- TMEM5 2
- TMEM67 1
- TMEM70 1
- TOR1A 1
- TP63 1
- TPP1 1
- TRAPPC9 1
- TREX1 1
- TRIM32 1
- TRIM37 1
- TRMT10A 1
- TSC1 1
- TSC2 1
- TSEN54 1
- TSHB 1
- TSHR 1
- TSPAN7 1
- TTBK2 1
- TTC19 1
- TTC8 1
- TTPA 1
- TUBA1A 1
- TUBA8 1
- TUBB 1
- TUBB2A 1
- TUBB2B 1
- TUBB4A 1
- TUBGCP6 1
- TUSC3 1
- TWIST1 1
- TYR 1
- UBE2A 1
- UBE3A 1
- UBE3B 1
- UBR1 1
- UMPS 1
- UPF3B 1
- UROC1 1
- VAMP1 1
- VDR 1
- VIPAS39 1
- VLDLR 1
- VPS13B 1
- VPS35 1
- WASHC5 1
- WDPCP 1
- WDR45 1
- WDR60 2
- WDR62 1
- WNT5A 1
- WWOX 1
- XPA 1
- XRCC4 1
- ZBTB20 1
- ZC4H2 1
- ZDHHC9 1
- ZEB2 1
- ZFP57 1
- ZFYVE26 1
- ZIC2 1
- ZMPSTE24 1
- ZNF711 1
STRs in panel
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This Panel is marked as Internal
BRIDGE_SPEED_NEURO_v2.0_20160416
Gene: SMC1A Red List (low evidence)
SMC1A (structural maintenance of chromosomes 1A)
EnsemblGeneIds (GRCh38): ENSG00000072501
EnsemblGeneIds (GRCh37): ENSG00000072501
OMIM: 300040, Gene2Phenotype
SMC1A is in 15 panels
EnsemblGeneIds (GRCh38): ENSG00000072501
EnsemblGeneIds (GRCh37): ENSG00000072501
OMIM: 300040, Gene2Phenotype
SMC1A is in 15 panels
1 review
BRIDGE consortium (NIHRBR-RD)
Green List (high evidence)
ddg2p_20141118; ddg2p_20141118_conf; ddg2p_201507; ddg2p_201507_conf; find_uk10k; gilissen_2014_known; Nijmegen_ID_diagnostic; Nijmegen_ID_candidates; gonzalez_mantilla_2016; GEL_ID_green_20160217; neuro_20160418_strict; UncertainCreated: 7 Feb 2017, 4:57 p.m.
Mode of inheritance
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Phenotypes
Cornelia de Lange syndrome 2, 300590
Variants in this GENE are reported as part of current diagnostic practice
Created: 7 Feb 2017, 4:57 p.m.
Panel version: 0.2
Panel version: 0.2
Details
- Mode of Inheritance
- X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
- Sources
-
- BRIDGE
- Phenotypes
-
- Cornelia de Lange syndrome 2, 300590
- OMIM
- 300040
- Clinvar variants
- Variants in SMC1A
- Penetrance
- Complete
- Panels with this gene
-
- Early onset or syndromic epilepsy
- Radial dysplasia
- Severe microcephaly
- Clefting
- Holoprosencephaly - NOT chromosomal
- Intellectual disability
- Cytopenias and congenital anaemias
- Rare syndromic craniosynostosis or isolated multisuture synostosis
- Fetal anomalies
- Skeletal dysplasia
- Monogenic short stature
- Osteogenesis imperfecta
- IUGR and IGF abnormalities
- Limb disorders
- DDG2P
History Filter Activity
7 Feb 2017, Gel status: 0
Created
Ellen McDonagh (Genomics England Curator)SMC1A was created by ellenmcdonagh
7 Feb 2017, Gel status: 0
Added New Source
Ellen McDonagh (Genomics England Curator)SMC1A was added to BRIDGE_SPEED_NEURO_v2.0_20160416panel. Sources: BRIDGE