Genes in panel
- AAAS 1
- ABAT 1
- ABCB7 1
- ABCC9 1
- ABCD1 1
- ABHD12 1
- ABHD5 1
- ACAD9 1
- ACADM 1
- ACADS 1
- ACADVL 1
- ACAT1 1
- ACOX1 1
- ACTB 1
- ACTG1 1
- ACY1 1
- ADAR 1
- ADCY5 1
- ADGRG1 2
- ADGRV1 2
- ADNP 1
- ADSL 1
- AFF2 1
- AFF4 1
- AFG3L2 1
- AGA 1
- AGK 1
- AGL 1
- AGPS 1
- AGXT 1
- AHDC1 1
- AIRE 1
- AKR1D1 1
- AKT1 1
- ALAD 1
- ALDH18A1 1
- ALDH1A3 1
- ALDH3A2 1
- ALDH4A1 1
- ALDH5A1 1
- ALDH7A1 1
- ALDOA 1
- ALDOB 1
- ALG1 1
- ALG12 1
- ALG3 1
- ALG6 1
- ALG8 1
- ALMS1 1
- ALPL 1
- ALS2 1
- ALX1 1
- ALX3 1
- AMER1 2
- AMPD2 1
- AMT 1
- ANKH 1
- ANKRD11 1
- ANO10 1
- ANO3 1
- ANO5 1
- ANTXR1 1
- AP1S2 1
- AP4B1 1
- AP4E1 1
- AP4M1 1
- AP4S1 1
- AP5Z1 1
- APOPT1 2
- APTX 1
- AR 1
- ARFGEF2 1
- ARG1 1
- ARHGEF9 1
- ARID1A 1
- ARID1B 1
- ARL6 1
- ARSA 1
- ARSB 1
- ARSE 2
- ARX 1
- ASAH1 1
- ASL 1
- ASPA 1
- ASPM 1
- ASS1 1
- ASXL1 1
- ATCAY 1
- ATIC 1
- ATL1 1
- ATM 1
- ATN1 1
- ATP13A2 1
- ATP1A3 1
- ATP6AP2 1
- ATP7A 1
- ATP7B 1
- ATP8B1 1
- ATRX 1
- ATXN1 1
- ATXN10 1
- ATXN2 1
- ATXN3 1
- ATXN7 1
- AUH 1
- AUTS2 1
- B3GALT6 1
- B4GALNT1 1
- B4GALT7 1
- BBS1 1
- BBS10 1
- BBS12 1
- BBS2 1
- BBS4 1
- BBS5 1
- BBS7 1
- BBS9 1
- BCAP31 1
- BCKDHA 1
- BCKDHB 1
- BCL11A 1
- BCOR 1
- BCS1L 1
- BEAN1 1
- BICD2 1
- BIN1 1
- BLM 1
- BMP4 1
- BMPER 1
- BRAF 1
- BRAT1 1
- BRCA1 1
- BRCA2 1
- BRIP1 1
- BRWD3 1
- BSCL2 1
- BSND 1
- BTD 1
- BUB1B 1
- C12orf65 2
- C19orf12 1
- C2orf71 2
- C5orf42 2
- C9orf72 1
- CA2 1
- CA8 1
- CACNA1A 1
- CACNA1S 1
- CACNB4 1
- CAMTA1 1
- CASK 1
- CASR 1
- CBL 1
- CBS 1
- CC2D1A 1
- CC2D2A 1
- CCBE1 1
- CCDC39 1
- CCDC88C 1
- CCND2 1
- CCT5 1
- CDC6 1
- CDH15 1
- CDK5RAP2 1
- CDKL5 1
- CDKN1C 1
- CDON 1
- CDT1 1
- CENPJ 1
- CEP152 1
- CEP290 1
- CEP41 1
- CEP57 1
- CHAMP1 1
- CHD2 1
- CHD7 1
- CHRNA2 1
- CHRNA4 1
- CHRNB2 1
- CHRNG 1
- CHST14 1
- CHST3 1
- CHUK 1
- CIB2 1
- CISD2 1
- CKAP2L 1
- CLCN2 1
- CLDN19 1
- CLN3 1
- CLN5 1
- CLN6 1
- CLN8 1
- CLPB 1
- CNTNAP2 1
- COASY 1
- COG1 1
- COG4 1
- COG7 1
- COG8 1
- COL11A2 1
- COL1A1 1
- COL2A1 1
- COL4A1 1
- COL4A2 1
- COL4A3BP 2
- COL9A3 1
- COLEC11 1
- COQ2 1
- COQ8A 1
- COQ9 1
- COX10 1
- COX15 1
- COX6B1 1
- COX7B 1
- CP 1
- CPA6 1
- CPS1 1
- CRB1 1
- CRB2 1
- CREBBP 1
- CSF1R 1
- CSPP1 1
- CSTB 1
- CTC1 1
- CTCF 1
- CTDP1 1
- CTNNB1 1
- CTNS 1
- CTSA 1
- CTSD 1
- CUL4B 1
- CUL7 1
- CYC1 1
- CYP27A1 1
- CYP2U1 1
- CYP7B1 1
- DAG1 1
- DARS 2
- DARS2 1
- DBT 1
- DCHS1 1
- DCTN1 1
- DCX 1
- DDC 1
- DDHD1 1
- DDHD2 1
- DDOST 1
- DDR2 1
- DDX11 1
- DDX3X 1
- DEAF1 1
- DEPDC5 1
- DHCR24 1
- DHCR7 1
- DHFR 1
- DIS3L2 1
- DKC1 1
- DLAT 1
- DLD 1
- DLG3 1
- DMD 1
- DMP1 1
- DMPK 1
- DNM2 1
- DNMT1 1
- DNMT3A 1
- DNMT3B 1
- DOCK8 1
- DOLK 1
- DPAGT1 1
- DPM1 1
- DRD2 1
- DYM 1
- DYNC1H1 1
- DYRK1A 1
- EBP 1
- EDNRB 1
- EFHC1 1
- EFNB1 1
- EFTUD2 1
- EGR2 1
- EHMT1 1
- EIF2AK3 1
- EIF4G1 1
- ELAC2 1
- ELOVL4 1
- ELOVL5 1
- EP300 1
- EPG5 1
- EPM2A 1
- ERCC1 1
- ERCC2 1
- ERCC3 1
- ERCC4 1
- ERCC5 1
- ERCC6 1
- ERCC6L2 1
- ERCC8 1
- ERLIN2 1
- ESCO2 1
- ETFA 1
- ETFB 1
- ETFDH 1
- ETHE1 1
- EVC 1
- EVC2 1
- EXOSC3 1
- EXT1 1
- EYA1 1
- EZH2 1
- FA2H 1
- FAH 1
- FAM111A 1
- FAM111B 1
- FAM126A 1
- FAM20C 1
- FANCA 1
- FANCC 1
- FANCD2 1
- FANCE 1
- FAR1 1
- FAT4 1
- FBN1 1
- FBN2 1
- FBP1 1
- FBXL4 1
- FBXO7 1
- FGD1 1
- FGD4 1
- FGF14 1
- FGF3 1
- FGFR1 1
- FGFR2 1
- FGFR3 1
- FH 1
- FHL1 1
- FIG4 1
- FKBP14 1
- FKRP 1
- FKTN 1
- FLNA 1
- FLNB 1
- FLVCR1 1
- FLVCR2 1
- FMR1 1
- FOLR1 1
- FOXG1 1
- FOXP1 1
- FOXP3 1
- FOXRED1 1
- FRAS1 1
- FREM1 1
- FREM2 1
- FRMD7 1
- FTCD 2
- FTL 1
- FTSJ1 1
- FUCA1 1
- FXN 1
- GAA 1
- GABRA1 1
- GABRB3 1
- GABRG2 1
- GAD1 1
- GALC 1
- GALE 1
- GALK1 1
- GALNS 1
- GALT 1
- GAMT 1
- GATA6 1
- GATM 1
- GBA 1
- GBA2 1
- GCDH 1
- GCH1 1
- GDAP1 1
- GDI1 1
- GFAP 1
- GFM1 1
- GHR 1
- GJA1 1
- GJB1 1
- GJC2 1
- GK 1
- GLB1 1
- GLDC 1
- GLE1 1
- GLI2 1
- GLI3 1
- GLIS3 1
- GLUD1 1
- GLUL 1
- GM2A 1
- GMPPA 1
- GMPPB 1
- GNAL 1
- GNAO1 1
- GNAS 1
- GNPAT 1
- GNPTAB 1
- GNPTG 1
- GNS 1
- GOSR2 1
- GPSM2 1
- GRIA3 1
- GRID2 1
- GRIK2 1
- GRIN2A 1
- GRIN2B 1
- GRM1 1
- GRN 1
- GTF2H5 1
- GTPBP3 1
- GUSB 1
- HADH 1
- HADHA 1
- HAX1 1
- HCCS 1
- HCFC1 1
- HCN1 1
- HDAC4 1
- HDAC8 1
- HEXA 1
- HEXB 1
- HGSNAT 1
- HIBCH 1
- HINT1 1
- HK1 1
- HLCS 1
- HMGCL 1
- HMGCS2 1
- HNF1B 1
- HNF4A 1
- HNRNPU 1
- HOXA1 1
- HPRT1 1
- HRAS 1
- HSD17B10 1
- HSD17B4 1
- HSD3B7 1
- HSPD1 1
- HSPG2 1
- HTT 1
- HUWE1 1
- HYAL1 1
- HYLS1 1
- IDS 1
- IDUA 1
- IER3IP1 1
- IFIH1 1
- IFT140 1
- IFT172 1
- IGF1 1
- IGF1R 1
- IGF2 1
- IGHMBP2 1
- IGSF1 1
- IKBKG 1
- IL1RAPL1 1
- INPP5E 1
- IQSEC2 1
- ISPD 2
- ITGA7 1
- ITPR1 1
- IVD 1
- KANSL1 1
- KARS 2
- KAT6A 1
- KAT6B 1
- KBTBD13 1
- KCNA1 1
- KCNA2 1
- KCNB1 1
- KCNC1 1
- KCNC3 1
- KCND3 1
- KCNJ10 1
- KCNJ11 1
- KCNQ2 1
- KCNQ3 1
- KCNT1 1
- KCTD7 1
- KDM5C 1
- KDM6A 1
- KIF11 1
- KIF1A 1
- KIF1BP 2
- KIF1C 1
- KIF5A 1
- KIF7 1
- KIRREL3 1
- KLHL40 1
- KMT2A 1
- KMT2B 1
- KMT2D 1
- KNL1 1
- KRAS 1
- KRIT1 1
- L1CAM 1
- L2HGDH 1
- LAMA1 1
- LAMA2 1
- LAMC3 1
- LAMP2 1
- LARGE1 1
- LBR 1
- LDB3 1
- LGI1 1
- LHX3 1
- LHX4 1
- LIG4 1
- LITAF 1
- LMBRD1 1
- LMNA 1
- LRP2 1
- LRP5 1
- LRPPRC 1
- LRRK2 1
- LYST 1
- MAB21L2 1
- MAF 1
- MAGEL2 1
- MAN2B1 1
- MANBA 1
- MAOA 1
- MAP2K1 1
- MAP2K2 1
- MAPT 1
- MARS2 1
- MASP1 1
- MC2R 1
- MCCC1 1
- MCCC2 1
- MCEE 1
- MCOLN1 1
- MCPH1 1
- MECP2 1
- MED12 1
- MED17 1
- MEF2C 1
- MEGF10 1
- MEGF8 1
- MFSD8 1
- MGAT2 1
- MGP 1
- MICU1 1
- MID1 1
- MITF 1
- MKKS 1
- MKS1 1
- MLC1 1
- MLYCD 1
- MMAA 1
- MMAB 1
- MMACHC 1
- MMADHC 1
- MNX1 1
- MOCS1 1
- MOCS2 1
- MPDU1 1
- MPI 1
- MPLKIP 1
- MPV17 1
- MPZ 1
- MRE11 2
- MT-ATP6 1
- MTHFR 1
- MTM1 1
- MTMR2 1
- MT-ND1 1
- MT-ND4 1
- MTO1 1
- MTPAP 1
- MTR 1
- MTRR 1
- MT-TK 1
- MTTP 1
- MUT 2
- MYBPC1 1
- MYCN 1
- MYH3 1
- MYO5A 1
- MYO7A 1
- NAA10 1
- NAGA 1
- NAGLU 1
- NAGS 1
- NALCN 1
- NBN 1
- NDE1 1
- NDP 1
- NDRG1 1
- NDUFA1 1
- NDUFS1 1
- NDUFS4 1
- NDUFS7 1
- NDUFS8 1
- NDUFV1 1
- NEFL 1
- NEU1 1
- NEXMIF 2
- NF1 1
- NFIX 1
- NFU1 1
- NGLY1 1
- NHEJ1 1
- NHLRC1 1
- NHS 1
- NIPA1 1
- NIPBL 1
- NKX2-1 1
- NKX2-5 1
- NOP56 1
- NPC1 1
- NPC2 1
- NPHP1 1
- NR2F1 1
- NRAS 1
- NSD1 1
- NSDHL 1
- NT5C2 1
- NTRK1 1
- NUBPL 1
- OBSL1 1
- OCRL 1
- OFD1 1
- OPA3 1
- OPHN1 1
- ORC1 1
- ORC4 1
- ORC6 1
- OTC 1
- OTX2 1
- OXCT1 1
- P3H1 2
- PACS1 1
- PAFAH1B1 1
- PAH 1
- PAK3 1
- PALB2 1
- PANK2 1
- PAPSS2 1
- PARK7 1
- PAX2 1
- PAX6 1
- PAX8 1
- PC 1
- PCBD1 1
- PCCA 1
- PCCB 1
- PCDH19 1
- PCNT 1
- PDCD10 1
- PDE4D 1
- PDGFB 1
- PDGFRB 1
- PDHA1 1
- PDHX 1
- PDSS2 1
- PDYN 1
- PEPD 1
- PEX1 1
- PEX10 1
- PEX12 1
- PEX13 1
- PEX14 1
- PEX16 1
- PEX19 1
- PEX2 1
- PEX26 1
- PEX3 1
- PEX5 1
- PEX6 1
- PEX7 1
- PGAP1 1
- PGAP2 1
- PGAP3 1
- PGK1 1
- PGM1 1
- PHF6 1
- PHF8 1
- PHGDH 1
- PHOX2B 1
- PIEZO2 1
- PIGA 1
- PIGL 1
- PIGN 1
- PIGO 1
- PIGV 1
- PIK3CA 1
- PIK3R1 1
- PIK3R2 1
- PINK1 1
- PITX3 1
- PLA2G6 1
- PLCB1 1
- PLEC 1
- PLK4 1
- PLOD1 1
- PLP1 1
- PMM2 1
- PMP22 1
- PNKD 1
- PNKP 1
- PNPLA6 1
- PNPO 1
- PNPT1 1
- POC1A 1
- POGZ 1
- POLG 1
- POLR3A 1
- POLR3B 1
- POMGNT1 1
- POMGNT2 1
- POMT1 1
- POMT2 1
- PORCN 1
- POU1F1 1
- PPP2R1A 1
- PPP2R2B 1
- PPP2R5D 1
- PPT1 1
- PQBP1 1
- PRICKLE1 1
- PRICKLE2 1
- PRKAR1A 1
- PRKCG 1
- PRKN 2
- PRKRA 1
- PROP1 1
- PRPS1 1
- PRRT2 1
- PRSS12 1
- PRX 1
- PSAP 1
- PSEN1 1
- PSMB8 1
- PSPH 1
- PTCH1 1
- PTCHD1 1
- PTDSS1 1
- PTEN 1
- PTF1A 1
- PTH1R 1
- PTPN11 1
- PTS 1
- PURA 1
- PYCR1 1
- QARS 2
- QDPR 1
- RAB18 1
- RAB23 1
- RAB39B 1
- RAB3GAP1 1
- RAB3GAP2 1
- RAD21 1
- RAF1 1
- RAI1 1
- RAPSN 1
- RARB 1
- RARS2 1
- RAX 1
- RBM8A 1
- RECQL4 1
- REEP1 1
- REEP2 1
- RELN 1
- RET 1
- RETREG1 2
- RFX6 1
- RNASEH2A 1
- RNASEH2B 1
- RNASEH2C 1
- RNASET2 1
- RNF216 1
- RNU4ATAC 1
- ROGDI 1
- ROR2 1
- RPGRIP1L 1
- RPS6KA3 1
- RTEL1 1
- RTN2 1
- RTTN 1
- RYR1 1
- SACS 1
- SALL1 1
- SAMHD1 1
- SATB2 1
- SBDS 1
- SBF2 1
- SC5D 1
- SCARB2 1
- SCN11A 1
- SCN1A 1
- SCN1B 1
- SCN2A 1
- SCN4A 1
- SCN8A 1
- SCN9A 1
- SCO1 1
- SCO2 1
- SDHA 1
- SDHAF1 1
- SETBP1 1
- SETD5 1
- SETX 1
- SF3B4 1
- SGCE 1
- SGSH 1
- SH3TC2 1
- SHANK3 1
- SHH 1
- SHOC2 1
- SIGMAR1 1
- SIK1 1
- SIL1 1
- SIX3 1
- SKI 1
- SLC12A6 1
- SLC13A5 1
- SLC16A2 1
- SLC17A5 1
- SLC19A3 1
- SLC20A2 1
- SLC22A5 1
- SLC25A15 1
- SLC25A20 1
- SLC25A22 1
- SLC2A1 1
- SLC2A10 1
- SLC2A2 1
- SLC33A1 1
- SLC35A2 1
- SLC35C1 1
- SLC46A1 1
- SLC4A1 1
- SLC4A4 1
- SLC52A3 1
- SLC5A5 1
- SLC6A1 1
- SLC6A17 1
- SLC6A19 1
- SLC6A3 1
- SLC6A5 1
- SLC6A8 1
- SLC9A6 1
- SLX4 1
- SMARCA2 1
- SMARCA4 1
- SMARCAL1 1
- SMARCB1 1
- SMC1A 1
- SMOC1 1
- SMPD1 1
- SNCA 1
- SNRPB 1
- SNX14 1
- SOS1 1
- SOX10 1
- SOX2 1
- SOX3 1
- SPART 2
- SPAST 1
- SPEG 1
- SPG11 1
- SPG21 1
- SPG7 1
- SPR 1
- SPRED1 1
- SPTAN1 1
- SPTBN2 1
- SPTLC2 1
- SRCAP 1
- SRD5A3 1
- ST3GAL3 1
- ST3GAL5 1
- STAMBP 1
- STIL 1
- STRA6 1
- STRADA 1
- STS 1
- STUB1 1
- STX1B 1
- STXBP1 1
- SUCLG1 1
- SUMF1 1
- SURF1 1
- SYNE1 1
- SYNGAP1 1
- SYNJ1 1
- SYP 1
- TAF1 1
- TARDBP 1
- TAT 1
- TAZ 1
- TBC1D24 1
- TBCE 1
- TBP 1
- TBX1 1
- TBX3 1
- TCF4 1
- TCOF1 1
- TECPR2 1
- TFAP2A 1
- TFAP2B 1
- TFG 1
- TGFBR1 1
- TGIF1 1
- TGM6 1
- TH 1
- THAP1 1
- THRA 1
- TIMM8A 1
- TK2 1
- TMCO1 1
- TMEM165 1
- TMEM237 1
- TMEM240 1
- TMEM5 2
- TMEM67 1
- TMEM70 1
- TOR1A 1
- TP63 1
- TPP1 1
- TRAPPC9 1
- TREX1 1
- TRIM32 1
- TRIM37 1
- TRMT10A 1
- TSC1 1
- TSC2 1
- TSEN54 1
- TSHB 1
- TSHR 1
- TSPAN7 1
- TTBK2 1
- TTC19 1
- TTC8 1
- TTPA 1
- TUBA1A 1
- TUBA8 1
- TUBB 1
- TUBB2A 1
- TUBB2B 1
- TUBB4A 1
- TUBGCP6 1
- TUSC3 1
- TWIST1 1
- TYR 1
- UBE2A 1
- UBE3A 1
- UBE3B 1
- UBR1 1
- UMPS 1
- UPF3B 1
- UROC1 1
- VAMP1 1
- VDR 1
- VIPAS39 1
- VLDLR 1
- VPS13B 1
- VPS35 1
- WASHC5 1
- WDPCP 1
- WDR45 1
- WDR60 2
- WDR62 1
- WNT5A 1
- WWOX 1
- XPA 1
- XRCC4 1
- ZBTB20 1
- ZC4H2 1
- ZDHHC9 1
- ZEB2 1
- ZFP57 1
- ZFYVE26 1
- ZIC2 1
- ZMPSTE24 1
- ZNF711 1
STRs in panel
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This Panel is marked as Internal
BRIDGE_SPEED_NEURO_v2.0_20160416
Gene: HCCS Red List (low evidence)
HCCS (holocytochrome c synthase)
EnsemblGeneIds (GRCh38): ENSG00000004961
EnsemblGeneIds (GRCh37): ENSG00000004961
OMIM: 300056, Gene2Phenotype
HCCS is in 17 panels
EnsemblGeneIds (GRCh38): ENSG00000004961
EnsemblGeneIds (GRCh37): ENSG00000004961
OMIM: 300056, Gene2Phenotype
HCCS is in 17 panels
1 review
BRIDGE consortium (NIHRBR-RD)
Green List (high evidence)
ddg2p_20141118; ddg2p_20141118_conf; ddg2p_201507; ddg2p_201507_conf; find_uk10k; gilissen_2014_known; Nijmegen_ID_diagnostic; Nijmegen_ID_candidates; GEL_ID_green_20160217; neuro_20160418_strict; Loss of functionCreated: 7 Feb 2017, 4:30 p.m.
Mode of inheritance
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Phenotypes
Microphthalmia, syndromic 7, 309801
Variants in this GENE are reported as part of current diagnostic practice
Created: 7 Feb 2017, 4:30 p.m.
Panel version: 0.2
Panel version: 0.2
Details
- Mode of Inheritance
- X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
- Sources
-
- BRIDGE
- Phenotypes
-
- Microphthalmia, syndromic 7, 309801
- OMIM
- 300056
- Clinvar variants
- Variants in HCCS
- Penetrance
- Complete
- Panels with this gene
-
- Anophthalmia or microphthalmia
- Bilateral congenital or childhood onset cataracts
- Intellectual disability
- Early onset or syndromic epilepsy
- DDG2P
- Undiagnosed metabolic disorders
- Childhood onset dystonia, chorea or related movement disorder
- Mosaic skin disorders - deep sequencing
- Pigmentary skin disorders
- Ocular coloboma
- Structural eye disease
- Retinal disorders
- Fetal anomalies
- Possible mitochondrial disorder - nuclear genes
- Mitochondrial disorders
- Likely inborn error of metabolism
- Glaucoma (developmental)
History Filter Activity
7 Feb 2017, Gel status: 0
Created
Ellen McDonagh (Genomics England Curator)HCCS was created by ellenmcdonagh
7 Feb 2017, Gel status: 0
Added New Source
Ellen McDonagh (Genomics England Curator)HCCS was added to BRIDGE_SPEED_NEURO_v2.0_20160416panel. Sources: BRIDGE