Proteinuric renal disease

Gene: VIPAS39

Amber List (moderate evidence)

VIPAS39 (VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog)
EnsemblGeneIds (GRCh38): ENSG00000151445
EnsemblGeneIds (GRCh37): ENSG00000151445
OMIM: 613401, Gene2Phenotype
VIPAS39 is in 17 panels

2 reviews

Arina Puzriakova (Genomics England Curator)

Comment on list classification: There is sufficient evidence to promote this gene to Green at the next GMS panel update.
Created: 27 Mar 2025, 1:36 p.m. | Last Modified: 27 Mar 2025, 1:36 p.m.
Panel Version: 4.25
VIPAS39 biallelic variants cause Arthrogryposis, renal dysfunction, and cholestasis 2 (OMIM:613404). At least 11 individuals have been reported in the literature. Proteinuria has been reported in at least 9 individuals (PMID:39736737;35151346;37202112;26019847;24071963;31479177) which supports inclusion of this gene on the panel.
Created: 27 Mar 2025, 1:33 p.m. | Last Modified: 27 Mar 2025, 1:38 p.m.
Panel Version: 4.27

Phenotypes
Arthrogryposis, renal dysfunction, and cholestasis 2 (OMIM:613404)

Publications

Eleanor Williams (Genomics England Curator)

I don't know

This gene was part of an initial gene list collated by Elizabeth Watson, North Bristol NHS Trust, February 2019 on behalf of the GMS Renal Specialist Test Group. Gene Symbol submitted: VIPAS39 ; Suggested initial gene rating: amber; Evidence for inclusion: PMID: 20190753; Other comments: Renal dysfunction part of syndromic presentation.
Created: 4 Feb 2019, 10:41 a.m.

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Arthrogryposis, renal dysfunction, and cholestasis 2 # 613404

Publications

Variants in this GENE are reported as part of current diagnostic practice

History Filter Activity

27 Mar 2025, Gel status: 2

Set publications

Arina Puzriakova (Genomics England Curator)

Publications for gene: VIPAS39 were set to 39736737; 35151346; 37202112; 26019847; 24071963

27 Mar 2025, Gel status: 2

Set publications

Arina Puzriakova (Genomics England Curator)

Publications for gene: VIPAS39 were set to 20190753

27 Mar 2025, Gel status: 2

Entity classified by Genomics England curator

Arina Puzriakova (Genomics England Curator)

Gene: vipas39 has been classified as Amber List (Moderate Evidence).

27 Mar 2025, Gel status: 1

Added Tag

Arina Puzriakova (Genomics England Curator)

Tag Q1_25_ promote_green tag was added to gene: VIPAS39.

27 Mar 2025, Gel status: 1

Set mode of inheritance

Arina Puzriakova (Genomics England Curator)

Mode of inheritance for gene: VIPAS39 was changed from to BIALLELIC, autosomal or pseudoautosomal

27 Mar 2025, Gel status: 1

Set Phenotypes

Arina Puzriakova (Genomics England Curator)

Phenotypes for gene: VIPAS39 were changed from Arthrogryposis, renal dysfunction, and cholestasis 2 # 613404 to Arthrogryposis, renal dysfunction, and cholestasis 2, OMIM:613404

23 Jun 2019, Gel status: 1

Set Phenotypes

Eleanor Williams (Genomics England Curator)

Phenotypes for gene: VIPAS39 were changed from to Arthrogryposis, renal dysfunction, and cholestasis 2 # 613404

23 Jun 2019, Gel status: 1

Set publications

Eleanor Williams (Genomics England Curator)

Publications for gene: VIPAS39 were set to

4 Feb 2019, Gel status: 1

Created, Added New Source, Set mode of inheritance

Eleanor Williams (Genomics England Curator)

gene: VIPAS39 was added gene: VIPAS39 was added to Proteinuric renal disease. Sources: NHS GMS Mode of inheritance for gene: VIPAS39 was set to