Early onset or syndromic epilepsy
Gene: SCN1AEnsemblGeneIds (GRCh38): ENSG00000144285
EnsemblGeneIds (GRCh37): ENSG00000144285
OMIM: 182389, Gene2Phenotype
SCN1A is in 13 panels
8 reviews
Rebecca Foulger (Genomics England curator)
Review and rating collated by Tracy Lester (Oxford Medical Genetics Laboratories Oxford University Hospitals NHS Foundation Trust, 2019_02_06) on behalf of Wessex and West Midlands GLH for GMS Neurology specialist test group, for Clinical Indication R59 'Early onset or syndromic epilepsy'. Review contributors: John Taylor and Helen Lord. Suggested gene rating: Green.Created: 6 Aug 2019, 8:38 p.m. | Last Modified: 6 Aug 2019, 8:38 p.m.
Panel Version: 1.189
Tracy Lester (Genetics laboratory, Oxford UK)
AD Dravet syndrome, >80% of cases. Common cause of epilepsy (also assoc with AD generalised epilepsy with febrile seizures, AD febrile seizures and AD familial hemiplegic migraine).Created: 6 Aug 2019, 8:31 p.m. | Last Modified: 6 Aug 2019, 8:31 p.m.
Panel Version: 1.188
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
Epilepsy, generalized, with febrile seizures plus,604403; Epileptic encephalopathy, early infantile, (Dravet syndrome),607208; Febrile seizures, familial,604403; Migraine, familial hemiplegic,609634
Publications
Amy McTague (UCL Institute of Child Health)
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Dravet syndrome; Epilepsy, generalized, with febrile seizures plus, type 2; Febrile seizures, familial, 3A
Publications
- Claes et al (2001) Am J Hum Genet 68: 1327_1332
- Escayg et al (2000) Nature Genet 24: 343-345
Variants in this GENE are reported as part of current diagnostic practice
Natalie Trump (NHS - Great Ormond Street Hospital)
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Dravet syndrome; Epilepsy, generalized, with febrile seizures plus, type 2; Febrile seizures, familial, 3A
Publications
- Claes et al (2001) Am J Hum Genet 68: 1327_1332
- Escayg et al (2000) Nature Genet 24: 343-345
Variants in this GENE are reported as part of current diagnostic practice
Manju Kurian (UCL-Institute of Child Health)
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Dravet syndrome; Epilepsy, generalized, with febrile seizures plus, type 2; Febrile seizures, familial, 3A
Publications
- Claes et al (2001) Am J Hum Genet 68: 1327_1332
- Escayg et al (2000) Nature Genet 24: 343-345
Variants in this GENE are reported as part of current diagnostic practice
Richard Scott (North Thames GMC/UCL)
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Dravet syndrome; Epilepsy, generalized, with febrile seizures plus, type 2; Febrile seizures, familial, 3A
Publications
- Claes et al (2001) Am J Hum Genet 68: 1327 1332
- Escayg et al (2000) Nature Genet 24: 343-345
Variants in this GENE are reported as part of current diagnostic practice
Richard Scott (Genomics England Curator)
Variable phenotype, which can include focal epilepsyCreated: 1 Feb 2016, 11:39 p.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
607208
Publications
Variants in this GENE are reported as part of current diagnostic practice
Ellen McDonagh (Genomics England Curator)
Comment when marking as ready: Confirmed DD gene and all 4 reviewers agree this should be green. Mode of inheritance and loss-of-function mechanism confirmed.Created: 21 Jan 2016, 11:50 a.m.
Comment on mode of inheritance: Confirmed, and not on imprinted gene list.Created: 21 Jan 2016, 11:49 a.m.
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
- Sources
-
- Wessex and West Midlands GLH
- NHS GMS
- NIHRBR-RD Consortium SPEED_v3.0_20170404
- Victorian Clinical Genetics Services
- UKGTN
- Expert
- Expert Review Green
- Phenotypes
-
- Epilepsy, generalized, with febrile seizures plus, type 2 604403
- Epileptic encephalopathy, early infantile, 6 (Dravet syndrome) 607208
- Febrile seizures, familial, 3A 604403
- Migraine, familial hemiplegic, 3 609634
- OMIM
- 182389
- Clinvar variants
- Variants in SCN1A
- Penetrance
- None
- Publications
- Panels with this gene
-
- Childhood onset dystonia, chorea or related movement disorder
- Hereditary ataxia with onset in adulthood
- Adult onset dystonia, chorea or related movement disorder
- Ataxia and cerebellar anomalies - narrow panel
- Early onset or syndromic epilepsy
- DDG2P
- Arthrogryposis
- Intellectual disability
- Brain channelopathy
- Fetal anomalies
- Familial cerebral small vessel disease
- Paroxysmal central nervous system disorders
- Adult onset neurodegenerative disorder
History Filter Activity
Added New Source
Rebecca Foulger (Genomics England curator)Source Wessex and West Midlands GLH was added to SCN1A.
Added New Source
Rebecca Foulger (Genomics England curator)Source NHS GMS was added to SCN1A.
Panel promoted to version 1.0
Sarah Leigh (Genomics England Curator)Ellen McDonagh: Comment on mode of inheritance
Added New Source
Sarah Leigh (Genomics England Curator)NIHRBR-RD Consortium SPEED_v3.0_20170404 was added to SCN1A. Panel: Genetic Epilepsy Syndromes
Added New Source
Sarah Leigh (Genomics England Curator)Victorian Clinical Genetics Services was added to SCN1A. Panel: Genetic Epilepsy Syndromes
Set publications
Sarah Leigh (Genomics England Curator)Publications for SCN1A were set to 11359211; 10742094
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for SCN1A were set to Epilepsy, generalized, with febrile seizures plus, type 2 604403; Epileptic encephalopathy, early infantile, 6 (Dravet syndrome) 607208; Febrile seizures, familial, 3A 604403; Migraine, familial hemiplegic, 3 609634
Added New Source
Sarah Leigh (Genomics England Curator)SCN1A was added to Genetic Epilepsy Syndromes panel. Sources: Expert Review Green,Expert,UKGTN
Created
Sarah Leigh (Genomics England Curator)SCN1A was created by Sarah Leigh