Early onset or syndromic epilepsy
Gene: SCN2AEnsemblGeneIds (GRCh38): ENSG00000136531
EnsemblGeneIds (GRCh37): ENSG00000136531
OMIM: 182390, Gene2Phenotype
SCN2A is in 7 panels
8 reviews
Rebecca Foulger (Genomics England curator)
Review and rating collated by Tracy Lester (Oxford Medical Genetics Laboratories Oxford University Hospitals NHS Foundation Trust, 2019_02_06) on behalf of Wessex and West Midlands GLH for GMS Neurology specialist test group, for Clinical Indication R59 'Early onset or syndromic epilepsy'. Review contributors: John Taylor and Helen Lord. Suggested gene rating: Green.Created: 6 Aug 2019, 8:38 p.m. | Last Modified: 6 Aug 2019, 8:38 p.m.
Panel Version: 1.189
Tracy Lester (Genetics laboratory, Oxford UK)
AD EIEE11 & AD benign infantile familial seizures. Many reported cases and variants on HGMDPro.Created: 6 Aug 2019, 8:31 p.m. | Last Modified: 6 Aug 2019, 8:31 p.m.
Panel Version: 1.188
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
Epileptic encephalopathy, early infantile,613721; Seizures, benign familial infantile,607745
Publications
Amy McTague (UCL Institute of Child Health)
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Early Infantile Epileptic Encephalopathy, Autosomal Dominant; Seizures, benign familial infantile, 3
Publications
- Kamiya et al (2004) J of Neuro 24(11): 2690 _2698
- Heron et al (2002) Lancet 360: 851_852
Variants in this GENE are reported as part of current diagnostic practice
Natalie Trump (NHS - Great Ormond Street Hospital)
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Early Infantile Epileptic Encephalopathy, Autosomal Dominant; Seizures, benign familial infantile, 3
Publications
- Kamiya et al (2004) J of Neuro 24(11): 2690 _2698
- Heron et al (2002) Lancet 360: 851_852
Variants in this GENE are reported as part of current diagnostic practice
Manju Kurian (UCL-Institute of Child Health)
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Early Infantile Epileptic Encephalopathy, Autosomal Dominant; Seizures, benign familial infantile, 3
Publications
- Kamiya et al (2004) J of Neuro 24(11): 2690 _2698
- Heron et al (2002) Lancet 360: 851_852
Variants in this GENE are reported as part of current diagnostic practice
Richard Scott (North Thames GMC/UCL)
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Early Infantile Epileptic Encephalopathy, Autosomal Dominant; Seizures, benign familial infantile, 3
Publications
- Kamiya et al (2004) J of Neuro 24(11): 2690 2698
- Heron et al (2002) Lancet 360: 851 852
Variants in this GENE are reported as part of current diagnostic practice
Richard Scott (Genomics England Curator)
Comment on list classification: Insufficient data for this phenotype (with inherited variants)Created: 8 May 2016, 7 p.m.
Ellen McDonagh (Genomics England Curator)
Comment when marking as ready: Confirmed DD gene and all 4 reviewers agree this should be green. Mode of inheritance and loss-of-function mechanism confirmed.Created: 21 Jan 2016, 11:54 a.m.
Comment on mode of inheritance: Confirmed and not on imprinted gene list.Created: 21 Jan 2016, 11:53 a.m.
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
- Sources
-
- Wessex and West Midlands GLH
- NHS GMS
- NIHRBR-RD Consortium SPEED_v3.0_20170404
- Victorian Clinical Genetics Services
- Illumina TruGenome Clinical Sequencing Services
- Radboud University Medical Center, Nijmegen
- UKGTN
- Expert
- Expert Review Green
- Phenotypes
-
- Epileptic encephalopathy, early infantile, 11 613721
- Seizures, benign familial infantile, 3 607745
- OMIM
- 182390
- Clinvar variants
- Variants in SCN2A
- Penetrance
- None
- Publications
- Panels with this gene
History Filter Activity
Added New Source
Rebecca Foulger (Genomics England curator)Source Wessex and West Midlands GLH was added to SCN2A.
Added New Source
Rebecca Foulger (Genomics England curator)Source NHS GMS was added to SCN2A.
Panel promoted to version 1.0
Sarah Leigh (Genomics England Curator)Ellen McDonagh: Comment on mode of inheritance
Added New Source
Sarah Leigh (Genomics England Curator)NIHRBR-RD Consortium SPEED_v3.0_20170404 was added to SCN2A. Panel: Genetic Epilepsy Syndromes
Added New Source
Sarah Leigh (Genomics England Curator)Victorian Clinical Genetics Services was added to SCN2A. Panel: Genetic Epilepsy Syndromes
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for SCN2A were set to Epileptic encephalopathy, early infantile, 11 613721; Seizures, benign familial infantile, 3 607745
Set publications
Sarah Leigh (Genomics England Curator)Publications for SCN2A were set to 12243921; 15028761
Added New Source
Sarah Leigh (Genomics England Curator)SCN2A was added to Genetic Epilepsy Syndromes panel. Sources: Expert Review Green,Expert,UKGTN,Radboud University Medical Center, Nijmegen,Illumina TruGenome Clinical Sequencing Services
Created
Sarah Leigh (Genomics England Curator)SCN2A was created by Sarah Leigh