Early onset or syndromic epilepsy
Gene: SLC9A6EnsemblGeneIds (GRCh38): ENSG00000198689
EnsemblGeneIds (GRCh37): ENSG00000198689
OMIM: 300231, Gene2Phenotype
SLC9A6 is in 10 panels
7 reviews
Tracy Lester (Genetics laboratory, Oxford UK)
X-linked dominant syndromic mental retardation (Christianson type). Along with other features see early onset seizures of variable types.Christianson et al 1999, 5 generation S African family - 16 affected males, 10 carrier females - 87.5% of the males had grand mal seizures. Gilfillan et al, 2008 - 3 additional families epilepsy occured between 9 & 26 months. SLC9A6 variants were identified in all 4 of these families. Schroer et al, 2010 - large family with 6 affected males - all had onset of seizures by 2 years - nonsense variant detected. Pescosolido et al, 2014 - 14 boys from 12 unrelated families (one family prev reported by Schroer) - all patients early onset of variable seizures.Created: 6 Aug 2019, 8:31 p.m. | Last Modified: 6 Aug 2019, 8:31 p.m.
Panel Version: 1.188
Mode of inheritance
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Phenotypes
Mental retardation, X-linked syndromic, Christianson type, 300243
Publications
Rebecca Foulger (Genomics England curator)
Review and rating collated by Tracy Lester (Oxford Medical Genetics Laboratories Oxford University Hospitals NHS Foundation Trust, 2019_02_06) on behalf of Wessex and West Midlands GLH for GMS Neurology specialist test group, for Clinical Indication R59 'Early onset or syndromic epilepsy'. Review contributors: John Taylor and Helen Lord. Suggested gene rating: Green.Created: 6 Aug 2019, 8:38 p.m. | Last Modified: 6 Aug 2019, 8:38 p.m.
Panel Version: 1.189
Comment on mode of inheritance: Comment on mode of inheritance: Changed the MOI from XLR to XLD based on Pescosolido et al., 2014 (PMID:25044251) who report some symptoms (mild to moderate ID) in heterozygous female carriers. Note that NHE6 is an alias for SLC9A6. Although Gene2Phenotype list a hemizygous inheritance for 'MENTAL RETARDATION SYNDROMIC X-LINKED CHRISTIANSON TYPE' OMIM record an XLD inheritance for MIM:300243.Created: 18 Jul 2019, 10:30 a.m. | Last Modified: 18 Jul 2019, 10:30 a.m.
Panel Version: 1.168
Amy McTague (UCL Institute of Child Health)
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Mental retardation, X-linked syndromic, Christianson type
Publications
- Gilfillan et al (2008) Am J Hum Genet 82: 1003_1010
Variants in this GENE are reported as part of current diagnostic practice
Natalie Trump (NHS - Great Ormond Street Hospital)
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Mental retardation, X-linked syndromic, Christianson type
Publications
- Gilfillan et al (2008) Am J Hum Genet 82: 1003_1010
Variants in this GENE are reported as part of current diagnostic practice
Manju Kurian (UCL-Institute of Child Health)
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Mental retardation, X-linked syndromic, Christianson type
Publications
- Gilfillan et al (2008) Am J Hum Genet 82: 1003_1010
Variants in this GENE are reported as part of current diagnostic practice
Richard Scott (North Thames GMC/UCL)
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Mental retardation, X-linked syndromic, Christianson type
Publications
- Gilfillan et al (2008) Am J Hum Genet 82: 1003 1010
Variants in this GENE are reported as part of current diagnostic practice
Ellen McDonagh (Genomics England Curator)
Comment on mode of inheritance: Confirmed with reviewer biallelic in females.Created: 29 Jan 2016, 5:26 p.m.
Details
- Mode of Inheritance
- X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
- Sources
-
- Wessex and West Midlands GLH
- NHS GMS
- Victorian Clinical Genetics Services
- Expert Review Green
- UKGTN
- Phenotypes
-
- Mental retardation, X-linked syndromic, Christianson type, 300243
- OMIM
- 300231
- Clinvar variants
- Variants in SLC9A6
- Penetrance
- None
- Publications
- Panels with this gene
-
- Childhood onset dystonia, chorea or related movement disorder
- Hereditary ataxia with onset in adulthood
- Ataxia and cerebellar anomalies - narrow panel
- Early onset or syndromic epilepsy
- DDG2P
- Intellectual disability
- Hereditary ataxia
- Fetal anomalies
- Severe microcephaly
- Adult onset neurodegenerative disorder
History Filter Activity
Added New Source
Rebecca Foulger (Genomics England curator)Source Wessex and West Midlands GLH was added to SLC9A6.
Added New Source
Rebecca Foulger (Genomics England curator)Source NHS GMS was added to SLC9A6.
Set Phenotypes
Rebecca Foulger (Genomics England curator)Phenotypes for gene: SLC9A6 were changed from Mental retardation, X-linked syndromic, Christianson type to Mental retardation, X-linked syndromic, Christianson type, 300243
Set mode of inheritance
Rebecca Foulger (Genomics England curator)Mode of inheritance for gene: SLC9A6 was changed from X-LINKED: hemizygous mutation in males, biallelic mutations in females to X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Set publications
Rebecca Foulger (Genomics England curator)Publications for gene: SLC9A6 were set to Gilfillan et al (2008) Am J Hum Genet 82: 1003_1010
Panel promoted to version 1.0
Sarah Leigh (Genomics England Curator)Ellen McDonagh: Comment on mode of inheritance
Added New Source
Sarah Leigh (Genomics England Curator)Victorian Clinical Genetics Services was added to SLC9A6. Panel: Genetic Epilepsy Syndromes
Added New Source
Sarah Leigh (Genomics England Curator)SLC9A6 was added to Genetic Epilepsy Syndromes panel. Sources: UKGTN,Expert Review Green
Created
Sarah Leigh (Genomics England Curator)SLC9A6 was created by Sarah Leigh