Genes in panel

Likely inborn error of metabolism

Gene: COX4I1

Amber List (moderate evidence)

COX4I1 (cytochrome c oxidase subunit 4I1)
EnsemblGeneIds (GRCh38): ENSG00000131143
EnsemblGeneIds (GRCh37): ENSG00000131143
OMIM: 123864, Gene2Phenotype
COX4I1 is in 4 panels

3 reviews

Achchuthan Shanmugasundram (Genomics England Curator)

Green List (high evidence)

Comment on list classification: This gene should also be rated green on this panel as this has already been rated green on R356 Mitochondrial disorder with complex IV deficiency panel (https://panelapp.genomicsengland.co.uk/panels/537/gene/COX4I1/) and is being currently recommended for promotion to green rating on Mitochondrial disorders panel (https://panelapp.genomicsengland.co.uk/panels/112/gene/COX4I1/)

There are two unrelated cases and functional evidence in support of the association of this gene with Mitochondrial complex IV deficiency.
Created: 6 Jun 2025, 1:38 p.m. | Last Modified: 6 Jun 2025, 1:38 p.m.
Panel Version: 8.6
PMID:28766551 reported a 5-year-old girl identified with homozygous COX4I1 variant (p.(Lys101_Thr102delinsAsnSer)) and mitochondrial complex IV deficiency, which segregated with the disorder in the family.

PMID:31290619 reported two brothers of Iraqi descent, identified with a homozygous missense variant in the COX4I1 gene (p.(Pro152Thr)) and mitochondrial complex IV deficiency, which also segregated with the disorder in the family.

There is also functional evidence available from the above publications.

This gene is also associated with relevant phenotypes in OMIM (MIM #619060).
Created: 6 Jun 2025, 1:35 p.m. | Last Modified: 6 Jun 2025, 1:35 p.m.
Panel Version: 8.5

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Mitochondrial complex IV deficiency, nuclear type 16, OMIM:619060

Publications

Ellen McDonagh (Genomics England Curator)

Comment on list classification: Demoted to red as the evidence for this gene is uncertain.
Created: 8 Feb 2016, 11:27 a.m.

Shamima Rahman (UCL Institute of Child Health)

I don't know

no reports of mutations in literature
Created: 3 Feb 2016, 5:15 p.m.

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
Phenotypes
  • Mitochondrial complex IV deficiency, nuclear type 16, OMIM:619060
Tags
Q2_25_ promote_green
OMIM
123864
Clinvar variants
Variants in COX4I1
Penetrance
None
Publications
Panels with this gene

History Filter Activity

6 Jun 2025, Gel status: 2

Set Phenotypes

Achchuthan Shanmugasundram (Genomics England Curator)

Phenotypes for gene: COX4I1 were changed from Mitochondrial Diseases; No OMIM phenotype to Mitochondrial complex IV deficiency, nuclear type 16, OMIM:619060

6 Jun 2025, Gel status: 2

Set publications

Achchuthan Shanmugasundram (Genomics England Curator)

Publications for gene: COX4I1 were set to

6 Jun 2025, Gel status: 2

Set mode of inheritance

Achchuthan Shanmugasundram (Genomics England Curator)

Mode of inheritance for gene: COX4I1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal

6 Jun 2025, Gel status: 2

Entity classified by Genomics England curator

Achchuthan Shanmugasundram (Genomics England Curator)

Gene: cox4i1 has been classified as Amber List (Moderate Evidence).

6 Jun 2025, Gel status: 1

Added Tag

Achchuthan Shanmugasundram (Genomics England Curator)

Tag Q2_25_ promote_green tag was added to gene: COX4I1.

8 Jan 2019, Gel status: 1

Panel promoted to version 1.0

Ellen McDonagh (Genomics England Curator)

Sarah Leigh: Associated with phenotype in O

16 Dec 2018, Gel status: 1

Created, Added New Source, Set mode of inheritance, Set Phenotypes

Ellen McDonagh (Genomics England Curator)

gene: COX4I1 was added gene: COX4I1 was added to Inborn errors of metabolism. Sources: Expert Review Red Mode of inheritance for gene: COX4I1 was set to Unknown Phenotypes for gene: COX4I1 were set to Mitochondrial Diseases; No OMIM phenotype