Amyotrophic lateral sclerosis/motor neuron disease
Gene: SLC52A3EnsemblGeneIds (GRCh38): ENSG00000101276
EnsemblGeneIds (GRCh37): ENSG00000101276
OMIM: 613350, Gene2Phenotype
SLC52A3 is in 15 panels
3 reviews
Arina Puzriakova (Genomics England Curator)
Comment on mode of inheritance: Updated from 'monoallelic' to 'biallelic' as I could not identify evidence supporting relevance of heterozygous variants in disease. This is consistent with the MOI in OMIM/G2P and other PanelApp panels.Created: 16 Jun 2022, 2:33 p.m. | Last Modified: 16 Jun 2022, 2:33 p.m.
Panel Version: 1.59
Alice Gardham (Genomics England)
BVVL has been described as an autosomal recessive juvenile form of ALS since both BVVL and ALS have bulbar and LMN involvement. BVVL differs from ALS in that BVVL includes deafness and has an earlier age of onset and a more irregular disease course; UMN limb signs are not invariably present. Reasonable to include in this panel as BVVL is a differential of juvenile ALSCreated: 24 Nov 2016, 4:04 p.m.
Phenotypes
Brown-Vialetto-Van Laere syndrome 1 211530
Publications
Ellen McDonagh (Genomics England Curator)
Comment on list classification: Again, sufficient evidence that variants in this gene cause Brown-Vialetto-Van Laere syndrome 1, however I am unsure whether this should be included on this panel.Created: 3 Nov 2016, 6:46 p.m.
This gene is on the ALS/MND NGS Panel in the UCLH National Hospital for Neurology and Neurosurgery & Institute of Neurology (NHNN) Neurogenetics genetic testing manual: "Mutations in SLC52A1, SLC52A2 and SLC52A3 are causes of conditions resembling childhood- onset motor neurone disease"Created: 13 Jun 2016, 9:23 a.m.
Phenotypes
conditions resembling childhood-onset motor neurone disease
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- Expert list
- Phenotypes
-
- Brown-Vialetto-Van Laere syndrome 1
- Fazio-Londe disease
- OMIM
- 613350
- Clinvar variants
- Variants in SLC52A3
- Penetrance
- Complete
- Panels with this gene
-
- Monogenic hearing loss
- Childhood onset dystonia, chorea or related movement disorder
- Undiagnosed metabolic disorders
- Adult onset neurodegenerative disorder
- Arthrogryposis
- Mitochondrial disorders
- Likely inborn error of metabolism
- Intellectual disability
- Possible mitochondrial disorder - nuclear genes
- Hereditary neuropathy or pain disorder
- Paediatric motor neuronopathies
- Fetal anomalies
- DDG2P
- Amyotrophic lateral sclerosis/motor neuron disease
- Hereditary neuropathy
History Filter Activity
Set mode of inheritance
Arina Puzriakova (Genomics England Curator)Mode of inheritance for gene: SLC52A3 was changed from MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown to BIALLELIC, autosomal or pseudoautosomal
panel promoted to version 1
Alice Gardham (Genomics England)Promoted to version 1 on 19th December 2016 following external review and internal curation
Gene classified by Genomics England curator
Alice Gardham (Genomics England)This gene has been classified as Green List (High Evidence).
Gene classified by Genomics England curator
Alice Gardham (Genomics England)This gene has been classified as Green List (High Evidence).
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Amber List (Moderate Evidence).
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Amber List (Moderate Evidence).
Added New Source
Ellen McDonagh (Genomics England Curator)SLC52A3 was added to Amyotrophic lateral sclerosis/motor neuron diseasepanel. Sources: Expert list
Created
Ellen McDonagh (Genomics England Curator)SLC52A3 was created by ellenmcdonagh