Retinal disorders
Gene: POMGNT2EnsemblGeneIds (GRCh38): ENSG00000144647
EnsemblGeneIds (GRCh37): ENSG00000144647
OMIM: 614828, Gene2Phenotype
POMGNT2 is in 17 panels
2 reviews
Achchuthan Shanmugasundram (Genomics England Curator)
The rating of this gene has been updated to Amber and the mode of inheritance set to 'BIALLELIC, autosomal or pseudoautosomal' following NHS Genomic Medicine Service approval.Created: 30 Jan 2023, 2:08 p.m. | Last Modified: 30 Jan 2023, 2:08 p.m.
Panel Version: 3.26
Comment on classification: This gene should be rated AMBER as this gene has been associated with retinal phenotype in one patient and was supported by results from zebrafish models.
PMID:22958903 reported three unrelated families with Walker-Warburg syndrome caused by autosomal recessive inheritance. However, only one of these patients were presented with any retinal phenotypes (retinal dysplasia). Another patient had other ocular defects (microphthalmia and macrophthalmia). In addition, functional studies with zebrafish models showed that POMGNT2 knockdown replicated features of Walker-Warburg syndrome, which included underdeveloped eyes, where ventral fusion of the retina was delayed.
PMID:27066570 reported milder forms of muscular dystrophy associated with biallelic variants in POMGNT2 gene in three patients. However, retinal phenotypes were not reported in these patients.
This gene was associated with Walker-Warburg syndrome in both OMIM and G2P.Created: 9 Jan 2023, 6:38 a.m. | Last Modified: 9 Jan 2023, 6:38 a.m.
Panel Version: 3.20
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 8, OMIM:614830
Publications
Eleanor Williams (Genomics England Curator)
Review submitted on behalf of Robert Henderson, Mr Chien Wong, Mr CK Patel. Publications: Manzini, M. C., Tambunan, D. E., Hill, R. S., Yu, T. W., Maynard, T. M., Heinzen, E. L., Shianna, K. V., Stevens, C. R., Partlow, J. N., Barry, B. J., Rodriguez, J., Gupta, V. A., and 10 others.Exome sequencing and functional validation in zebrafish identify GTDC2 mutations as a cause of Walker-Warburg syndrome.Am. J. Hum. Genet. 91: 541-547, 2012;Created: 21 Dec 2022, 4:51 p.m. | Last Modified: 21 Dec 2022, 4:51 p.m.
Panel Version: 3.6
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Muscle Eye Brain disease, Walker Warburg disease; limb girdle muscular dystrophy
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- NHS GMS
- Expert Review Amber
- Expert list
- Phenotypes
-
- Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 8, OMIM:614830
- OMIM
- 614828
- Clinvar variants
- Variants in POMGNT2
- Penetrance
- None
- Publications
- Panels with this gene
-
- Undiagnosed metabolic disorders
- Congenital disorders of glycosylation
- Cerebellar hypoplasia
- Structural eye disease
- Likely inborn error of metabolism
- Malformations of cortical development
- Hydrocephalus
- Ataxia and cerebellar anomalies - narrow panel
- Intellectual disability
- Arthrogryposis
- Childhood onset dystonia, chorea or related movement disorder
- DDG2P
- Retinal disorders
- Congenital muscular dystrophy
- Limb girdle muscular dystrophies, myofibrillar myopathies and distal myopathies
- Fetal anomalies
- Bilateral congenital or childhood onset cataracts
History Filter Activity
Added New Source
Achchuthan Shanmugasundram (Genomics England Curator)Source NHS GMS was added to POMGNT2.
Set Phenotypes
Achchuthan Shanmugasundram (Genomics England Curator)Phenotypes for gene: POMGNT2 were changed from to Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 8, OMIM:614830
Set publications
Achchuthan Shanmugasundram (Genomics England Curator)Publications for gene: POMGNT2 were set to
Set mode of inheritance
Achchuthan Shanmugasundram (Genomics England Curator)Mode of inheritance for gene: POMGNT2 was changed from to BIALLELIC, autosomal or pseudoautosomal
Entity classified by Genomics England curator
Achchuthan Shanmugasundram (Genomics England Curator)Gene: pomgnt2 has been classified as Amber List (Moderate Evidence).
Created, Added New Source, Set mode of inheritance
Eleanor Williams (Genomics England Curator)gene: POMGNT2 was added gene: POMGNT2 was added to Retinal disorders. Sources: Expert list Mode of inheritance for gene: POMGNT2 was set to