Early onset or syndromic epilepsy
Gene: COL4A1EnsemblGeneIds (GRCh38): ENSG00000187498
EnsemblGeneIds (GRCh37): ENSG00000187498
OMIM: 120130, Gene2Phenotype
COL4A1 is in 25 panels
8 reviews
Rebecca Foulger (Genomics England curator)
Review and rating collated by Tracy Lester (Oxford Medical Genetics Laboratories Oxford University Hospitals NHS Foundation Trust, 2019_02_06) on behalf of Wessex and West Midlands GLH for GMS Neurology specialist test group, for Clinical Indication R59 'Early onset or syndromic epilepsy'. Review contributors: John Taylor and Helen Lord. Suggested gene rating: Green.Created: 6 Aug 2019, 8:38 p.m. | Last Modified: 6 Aug 2019, 8:38 p.m.
Panel Version: 1.189
Tracy Lester (Genetics laboratory, Oxford UK)
AD Porencephaly 1 features include porencephaly, hemiplegia and seizures. Gould et al,2005 - two unrelated families both dfound to have het missense variants. Both mutations changed conserved Gly residues within the conserved Gly-X-Y repeats in the triple helical domain. Yoneda et al, 2013 - identified mutations in 10/61 patients with porencephaly who didn't have mutations in COLA2 and in 5/10 additional patients with schizenphaly (Japanese). 9 mutations occures at highly conserved Gly residues as before.Created: 6 Aug 2019, 8:31 p.m. | Last Modified: 6 Aug 2019, 8:31 p.m.
Panel Version: 1.188
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
Retinal arteries tortuosity of 180000; Angiopathy, hereditary, with nephropathy, aneurysms, and muscle cramps, 611773; Brain small vessel disease with or without ocular anomalies, 607595; Porencephaly, 175780; Schizencephaly 269160
Publications
Sarah Leigh (Genomics England Curator)
Comment when marking as ready: Associated with relevant phenotype in OMIM and as confirmed Gen2Phen gene. At least 4 variants reported in unrelated cases in which seizures are a phenotypic feature.Created: 13 Nov 2018, 11:39 a.m.
Zornitza Stark (Australian Genomics)
Seizures are a reported feature.Created: 10 Aug 2018, 5:24 a.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
Brain small vessel disease with or without ocular anomalies, MIM#607595
Variants in this GENE are reported as part of current diagnostic practice
Amy McTague (UCL Institute of Child Health)
Natalie Trump (NHS - Great Ormond Street Hospital)
Manju Kurian (UCL-Institute of Child Health)
Richard Scott (North Thames GMC/UCL)
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
- Sources
-
- Wessex and West Midlands GLH
- NHS GMS
- Expert Review Green
- Victorian Clinical Genetics Services
- Expert
- Phenotypes
-
- Angiopathy, hereditary, with nephropathy, aneurysms, and muscle cramps 611773
- Brain small vessel disease with or without ocular anomalies 607595
- Porencephaly 1 175780
- Schizencephaly 269160
- OMIM
- 120130
- Clinvar variants
- Variants in COL4A1
- Penetrance
- None
- Publications
- Panels with this gene
-
- Thoracic aortic aneurysm or dissection (GMS)
- Intracerebral calcification disorders
- Adult onset neurodegenerative disorder
- Structural eye disease
- Inherited white matter disorders
- Cerebral vascular malformations
- Arthrogryposis
- Adult onset leukodystrophy
- Malformations of cortical development
- Early onset or syndromic epilepsy
- Hydrocephalus
- Retinal disorders
- Intellectual disability
- Bilateral congenital or childhood onset cataracts
- Proteinuric renal disease
- Thoracic aortic aneurysm or dissection
- Haematuria
- Cystic kidney disease
- Fetal anomalies
- DDG2P
- Familial cerebral small vessel disease
- White matter disorders and cerebral calcification - narrow panel
- Glaucoma (developmental)
- Congenital muscular dystrophy
- Anophthalmia or microphthalmia
History Filter Activity
Added New Source
Rebecca Foulger (Genomics England curator)Source Wessex and West Midlands GLH was added to COL4A1.
Added New Source
Rebecca Foulger (Genomics England curator)Source NHS GMS was added to COL4A1.
Panel promoted to version 1.0
Sarah Leigh (Genomics England Curator)Zornitza Stark: Seizures are a reported featur
Entity classified by Genomics England curator
Sarah Leigh (Genomics England Curator)Gene: col4a1 has been classified as Green List (High Evidence).
Entity classified by Genomics England curator
Sarah Leigh (Genomics England Curator)Gene: col4a1 has been classified as Green List (High Evidence).
Set publications
Sarah Leigh (Genomics England Curator)Publications for gene: COL4A1 were set to
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for gene: COL4A1 were changed from to Angiopathy, hereditary, with nephropathy, aneurysms, and muscle cramps 611773; Brain small vessel disease with or without ocular anomalies 607595; Porencephaly 1 175780; Schizencephaly 269160
Set mode of inheritance
Sarah Leigh (Genomics England Curator)Mode of inheritance for gene: COL4A1 was changed from to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Added New Source
Sarah Leigh (Genomics England Curator)Expert Review Amber was added to COL4A1. Panel: Genetic Epilepsy Syndromes
Added New Source
Sarah Leigh (Genomics England Curator)Victorian Clinical Genetics Services was added to COL4A1. Panel: Genetic Epilepsy Syndromes
Added New Source
Sarah Leigh (Genomics England Curator)COL4A1 was added to Genetic Epilepsy Syndromes panel. Sources: Expert Review Red,Expert
Created
Sarah Leigh (Genomics England Curator)COL4A1 was created by Sarah Leigh