Early onset or syndromic epilepsy
Gene: PEX7EnsemblGeneIds (GRCh38): ENSG00000112357
EnsemblGeneIds (GRCh37): ENSG00000112357
OMIM: 601757, Gene2Phenotype
PEX7 is in 23 panels
4 reviews
Rebecca Foulger (Genomics England curator)
As discussed with members of the GMS Neurology Specialist Test Group on the Webex call 22nd November 2019 for Clinical Indication R59 Early onset or syndromic epilepsy: Agreed that there is insufficient evidence to rate this gene Green. Better tested through the metabolic panel. Demoted from Green to Amber.Created: 25 Nov 2019, 8:59 p.m. | Last Modified: 25 Nov 2019, 8:59 p.m.
Panel Version: 1.452
Review and rating collated by Tracy Lester (Oxford Medical Genetics Laboratories Oxford University Hospitals NHS Foundation Trust, 2019_02_06) on behalf of Wessex and West Midlands GLH for GMS Neurology specialist test group, for Clinical Indication R59 'Early onset or syndromic epilepsy'. Review contributors: John Taylor and Helen Lord. Suggested gene rating: Amber.Created: 6 Aug 2019, 8:38 p.m. | Last Modified: 6 Aug 2019, 8:38 p.m.
Panel Version: 1.189
Tracy Lester (Genetics laboratory, Oxford UK)
AR Perioxisome biogenesis disorder 9B and Rhizomleic chondroplasia punctata type 1. PBD9B - milder phenotype with long survival less neurologic involvement, normal or near growth and absence of rhizomelia. RCDP1 - characterised by disprop short stature primarily affecting the proximal parts of the extremities and other features. Most die in first decade of life - can't see any mention in the clinical features section on OMIM of seizures/epilepsy.Created: 6 Aug 2019, 8:31 p.m. | Last Modified: 6 Aug 2019, 8:31 p.m.
Panel Version: 1.188
Sarah Leigh (Genomics England Curator)
Comment when marking as ready: Associated with relevant phenotype in OMIM and as confirmed Gen2Phen gene. Seizures are a part of the spectrum of features in this phenotype (Genomics England clinical fellow Arianna Tucci).At least 6 variants reported in at least 7 cases.Created: 7 Nov 2018, 5:07 p.m.
Zornitza Stark (Australian Genomics)
Seizures are part of the phenotype of this metabolic disorder.Created: 18 Aug 2018, 10:32 a.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Peroxisome biogenesis disorder 9B, MIM#614879
Variants in this GENE are reported as part of current diagnostic practice
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Amber
- Wessex and West Midlands GLH
- NHS GMS
- Victorian Clinical Genetics Services
- Phenotypes
-
- Rhizomelic chondrodysplasia punctata, type 1 215100
- OMIM
- 601757
- Clinvar variants
- Variants in PEX7
- Penetrance
- None
- Publications
- Panels with this gene
-
- Childhood onset dystonia, chorea or related movement disorder
- Palmoplantar keratodermas
- Hereditary neuropathy
- Peroxisomal disorders
- Early onset or syndromic epilepsy
- DDG2P
- Chondrodysplasia punctata
- Intellectual disability
- Adult onset leukodystrophy
- Fetal hydrops
- Malformations of cortical development
- Bilateral congenital or childhood onset cataracts
- Retinal disorders
- Likely inborn error of metabolism
- Ductal plate malformation
- Structural eye disease
- Arthrogryposis
- Neonatal cholestasis
- Fetal anomalies
- Hereditary neuropathy or pain disorder
- Glaucoma (developmental)
- Undiagnosed metabolic disorders
- Skeletal dysplasia
History Filter Activity
Entity classified by Genomics England curator
Rebecca Foulger (Genomics England curator)Gene: pex7 has been classified as Amber List (Moderate Evidence).
Added New Source
Rebecca Foulger (Genomics England curator)Source Wessex and West Midlands GLH was added to PEX7.
Added New Source
Rebecca Foulger (Genomics England curator)Source NHS GMS was added to PEX7.
Panel promoted to version 1.0
Sarah Leigh (Genomics England Curator)Zornitza Stark: Seizures are part of the pheno
Entity classified by Genomics England curator
Sarah Leigh (Genomics England Curator)Gene: pex7 has been classified as Green List (High Evidence).
Set publications
Sarah Leigh (Genomics England Curator)Publications for gene: PEX7 were set to
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for gene: PEX7 were changed from to Rhizomelic chondrodysplasia punctata, type 1 215100
Set mode of inheritance
Sarah Leigh (Genomics England Curator)Mode of inheritance for gene: PEX7 was changed from to BIALLELIC, autosomal or pseudoautosomal
Entity classified by Genomics England curator
Sarah Leigh (Genomics England Curator)Gene: pex7 has been classified as Green List (High Evidence).
Added New Source
Sarah Leigh (Genomics England Curator)Expert Review Amber was added to PEX7. Panel: Genetic Epilepsy Syndromes
Added New Source
Sarah Leigh (Genomics England Curator)PEX7 was added to Genetic Epilepsy Syndromes panel. Sources: Victorian Clinical Genetics Services
Created
Sarah Leigh (Genomics England Curator)PEX7 was created by Sarah Leigh