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Severe Paediatric Disorders

Gene: COL2A1

Green List (high evidence)

COL2A1 (collagen type II alpha 1 chain)
EnsemblGeneIds (GRCh38): ENSG00000139219
EnsemblGeneIds (GRCh37): ENSG00000139219
OMIM: 120140, Gene2Phenotype
COL2A1 is in 21 panels

1 review

Louise Daugherty (Genomics England Curator)

I don't know

Initial gene list (NGC_genelist-20190823_GREEN_dis_moi_forCuration_20200211.xlsx) collated by Dr Courtney French (University of Cambridge University Hospital NHS Foundation), Dr Karyn Megy (Clinical Feedback Lead, NIHR BioResource - Rare Diseases Study, University of Cambridge University Hospital NHS Foundation), Dr Alba Sanchis-Juan (NIHR BioResource - Rare Diseases Study, University of Cambridge University Hospital NHS Foundation) and Lucy Raymond (Professor of Medical Genetics and Neurodevelopment, University of Cambridge University Hospital NHS Foundation). Submitted to the PanelApp resource January 2020 on behalf of the Next Generation Children Project, Addenbrookes' Hospital, Cambridge. Gene Symbol submitted: COL2A1; Recommended initial gene rating: Green List (high evidence); Phenotypes: Achondrogenesis, type II or hypochondrogenesis, 200610 (3) | Avascular necrosis of the femoral head, 608805 (3) | Czech dysplasia, 609162 (3) | Epiphyseal dysplasia, multiple, with myopia and deafness, 132450 (3) | Kniest dysplasia, 156550 (3) | Legg-Calve-Perthes disease, 150600 (3) | Osteoarthritis with mild chondrodysplasia, 604864 (3) | Platyspondylic skeletal dysplasia, Torrance type, 151210 (3) | SED congenita, 183900 (3) | SMED Strudwick type, 184250 (3) | Spondyloepiphyseal dysplasia, Stanescu type, 616583 (3) | Spondyloperipheral dysplasia, 271700 (3) | Stickler sydrome, type I, nonsyndromic ocular, 609508 (3) | Stickler syndrome, type I, 108300 (3) | Vitreoretinopathy with phalangeal epiphyseal dysplasia (3); Mode of inheritance: Autosomal dominant | Autosomal dominant | Autosomal dominant | Autosomal dominant | Autosomal dominant | Autosomal dominant | Autosomal dominant | Autosomal dominant | Autosomal dominant | Autosomal dominant | Autosomal dominant | Autosomal dominant | Autosomal dominant | Autosomal dominant | ND
Created: 20 Feb 2020, 5:17 p.m. | Last Modified: 20 Feb 2020, 5:17 p.m.
Panel Version: 0.12

Details

Mode of Inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Next Generation Children Project
  • Expert Review Green
  • Expert list
Phenotypes
  • Achondrogenesis, type II or hypochondrogenesis, 200610
  • Spondyloperipheral dysplasia, 271700
  • SMED Strudwick type, 184250
  • Stickler sydrome, type I, nonsyndromic ocular, 609508
  • Vitreoretinopathy with phalangeal epiphyseal dysplasia
  • Kniest dysplasia, 156550
  • SED congenita, 183900
  • Czech dysplasia, 609162
  • Platyspondylic skeletal dysplasia, Torrance type, 151210
  • Epiphyseal dysplasia, multiple, with myopia and deafness, 132450
  • Spondyloepiphyseal dysplasia, Stanescu type, 616583
  • Osteoarthritis with mild chondrodysplasia, 604864
  • Legg-Calve-Perthes disease, 150600
  • Stickler syndrome, type I, 108300
  • Avascular necrosis of the femoral head, 608805
OMIM
120140
Clinvar variants
Variants in COL2A1
Penetrance
None
Publications
Panels with this gene

History Filter Activity

21 Feb 2020, Gel status: 3

Set mode of inheritance

Louise Daugherty (Genomics England Curator)

Mode of inheritance for gene COL2A1 was changed from to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown

20 Feb 2020, Gel status: 3

Set publications

Louise Daugherty (Genomics England Curator)

Publications for gene COL2A1 were updated from to 30847515

20 Feb 2020, Gel status: 3

Set Phenotypes

Louise Daugherty (Genomics England Curator)

Added phenotypes Achondrogenesis, type II or hypochondrogenesis, 200610; Spondyloperipheral dysplasia, 271700; SMED Strudwick type, 184250; Stickler sydrome, type I, nonsyndromic ocular, 609508; Vitreoretinopathy with phalangeal epiphyseal dysplasia; Kniest dysplasia, 156550; SED congenita, 183900; Czech dysplasia, 609162; Platyspondylic skeletal dysplasia, Torrance type, 151210; Osteoarthritis with mild chondrodysplasia, 604864; Spondyloepiphyseal dysplasia, Stanescu type, 616583; Epiphyseal dysplasia, multiple, with myopia and deafness, 132450; Legg-Calve-Perthes disease, 150600; Stickler syndrome, type I, 108300; Avascular necrosis of the femoral head, 608805 for gene: COL2A1

20 Feb 2020, Gel status: 3

Set Phenotypes

Louise Daugherty (Genomics England Curator)

Added phenotypes Achondrogenesis, type II or hypochondrogenesis, 200610; Spondyloperipheral dysplasia, 271700; SMED Strudwick type, 184250; Stickler sydrome, type I, nonsyndromic ocular, 609508; Vitreoretinopathy with phalangeal epiphyseal dysplasia; Kniest dysplasia, 156550; SED congenita, 183900; Czech dysplasia, 609162; Platyspondylic skeletal dysplasia, Torrance type, 151210; Osteoarthritis with mild chondrodysplasia, 604864; Spondyloepiphyseal dysplasia, Stanescu type, 616583; Epiphyseal dysplasia, multiple, with myopia and deafness, 132450; Legg-Calve-Perthes disease, 150600; Stickler syndrome, type I, 108300; Avascular necrosis of the femoral head, 608805 for gene: COL2A1

19 Feb 2020, Gel status: 3

Set Phenotypes

Louise Daugherty (Genomics England Curator)

Added phenotypes Achondrogenesis, type II or hypochondrogenesis, 200610; Spondyloperipheral dysplasia, 271700; SMED Strudwick type, 184250; Stickler sydrome, type I, nonsyndromic ocular, 609508; Vitreoretinopathy with phalangeal epiphyseal dysplasia; Kniest dysplasia, 156550; SED congenita, 183900; Czech dysplasia, 609162; Platyspondylic skeletal dysplasia, Torrance type, 151210; Osteoarthritis with mild chondrodysplasia, 604864; Spondyloepiphyseal dysplasia, Stanescu type, 616583; Epiphyseal dysplasia, multiple, with myopia and deafness, 132450; Legg-Calve-Perthes disease, 150600; Stickler syndrome, type I, 108300; Avascular necrosis of the femoral head, 608805 for gene: COL2A1

19 Feb 2020, Gel status: 3

Set Phenotypes

Louise Daugherty (Genomics England Curator)

Added phenotypes Platyspondylic skeletal dysplasia, Torrance type, 151210; Stickler syndrome, type I, 108300; Spondyloperipheral dysplasia, 271700; Osteoarthritis with mild chondrodysplasia, 604864; Kniest dysplasia, 156550; SMED Strudwick type, 184250; Czech dysplasia, 609162; Epiphyseal dysplasia, multiple, with myopia and deafness, 132450; Legg-Calve-Perthes disease, 150600; Vitreoretinopathy with phalangeal epiphyseal dysplasia; SED congenita, 183900; Spondyloepiphyseal dysplasia, Stanescu type, 616583; Avascular necrosis of the femoral head, 608805; Achondrogenesis, type II or hypochondrogenesis, 200610; Stickler sydrome, type I, nonsyndromic ocular, 609508 for gene: COL2A1

14 Feb 2020, Gel status: 3

Added New Source

Louise Daugherty (Genomics England Curator)

Source Next Generation Children Project was added to COL2A1.

14 Feb 2020, Gel status: 3

Added New Source, Status Update

Louise Daugherty (Genomics England Curator)

Source Expert Review Green was added to COL2A1. Rating Changed from Red List (low evidence) to Green List (high evidence)

14 Feb 2020, Gel status: 1

Created, Added New Source, Set mode of inheritance

Louise Daugherty (Genomics England Curator)

gene: COL2A1 was added gene: COL2A1 was added to Severe Paediatric Disorders. Sources: Expert list Mode of inheritance for gene: COL2A1 was set to