Skeletal dysplasia
Gene: XYLT2EnsemblGeneIds (GRCh38): ENSG00000015532
EnsemblGeneIds (GRCh37): ENSG00000015532
OMIM: 608125, Gene2Phenotype
XYLT2 is in 9 panels
4 reviews
Tracy Lester (Genetics laboratory, Oxford UK)
OI and decreasing bone density gp of SD - low bone mineral density leading to multiple skeletal abnormalities (esp vertebrae). green - only 2 families described but both segregate correctly as AR and functional work shows reduced levels of XylT. amber/green. Note added by AW - SERPINH1 yes. Listed in Bonafe. OI type X. ; Review on behalf of Tracy Lester/Michael Oldridge/Andrew WilkieCreated: 6 Mar 2019, 11:44 a.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Spondyloocular syndrome 605822
Publications
Eleanor Williams (Genomics England Curator)
PMID: 26027496 - Munns et al 2015 - 3 patients from 2 unrelated families with bone fragility, hearing impairment, cardiac septal defects, and learning difficulties (spondyloocular syndrome). Identified homozygosity for a 1-bp duplication and a 1-bp deletion, respectively. The mutations, which segregated with disease in each family, were not found in public variant databases.
PMID: 26987875- Taylan et al 2016 - report on 4 patients, 2 unrelated patients and 2 siblings, with spondyloocular syndrome and novel mutations in XYLT2.Created: 7 May 2019, 10:52 p.m.
This gene was part of an initial gene list collated by Tracy Lester, Oxford Medical Genetics Laboratories, Oxford University Hospitals NHS Foundation Trust, February 2019 on behalf of the GMS Musculoskeletal Specialist Group; Gene symbol submitted: XYLT2; Initial rating suggestion: I don't knowCreated: 6 Mar 2019, 11:37 a.m.
Sarah Leigh (Genomics England Curator)
Comment when marking as ready: Associated with phenotypes in OMIM and Spondyloocular syndrome 605822 in G2P. At least three variants reported in Spondyloocular syndrome 605822Created: 1 Aug 2016, 9:59 a.m.
Comment on phenotypes: At least one variant also reported in Pseudoxanthoma elasticum, modifier of severity of 264800Created: 1 Aug 2016, 9:58 a.m.
Ana Beleza (Bristol Regional Genetics Service)
Tier 1Created: 17 Jun 2016, 8:10 a.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Spondyloocular syndrome 605822; {Pseudoxanthoma elasticum, modifier of severity of} 264800
Variants in this GENE are reported as part of current diagnostic practice
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- NHS GMS
- Expert Review Green
- Expert list
- Phenotypes
-
- Spondyloocular syndrome 605822
- OMIM
- 608125
- Clinvar variants
- Variants in XYLT2
- Penetrance
- Complete
- Publications
- Panels with this gene
History Filter Activity
Set Phenotypes
Eleanor Williams (Genomics England Curator)Added phenotypes Spondyloocular syndrome 605822 for gene: XYLT2
Added New Source, Status Update
Eleanor Williams (Genomics England Curator)Source NHS GMS was added to XYLT2. Rating Changed from Green List (high evidence) to Green List (high evidence)
panel promoted to version 1
Sarah Leigh (Genomics England Curator)Promoted to version 1 9th August 2016
Gene classified by Genomics England curator
Sarah Leigh (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for XYLT2 were set to Spondyloocular syndrome 605822
Set publications
Sarah Leigh (Genomics England Curator)Publications for XYLT2 were set to 26987875
Set Mode of Inheritance
Sarah Leigh (Genomics England Curator)Mode of inheritance for XYLT2 was changed to BIALLELIC, autosomal or pseudoautosomal
Gene classified by Genomics England curator
Sarah Leigh (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Upload gene information
Sarah Leigh (Genomics England Curator)XYLT2 was added to Unexplained skeletal dysplasiapanel. Sources: Expert list
Added New Source
Sarah Leigh (Genomics England Curator)XYLT2 was added to Unexplained skeletal dysplasiapanel. Sources:
Created
Sarah Leigh (Genomics England Curator)XYLT2 was created by sleigh