Early onset or syndromic epilepsy
Gene: CLN6EnsemblGeneIds (GRCh38): ENSG00000128973
EnsemblGeneIds (GRCh37): ENSG00000128973
OMIM: 606725, Gene2Phenotype
CLN6 is in 17 panels
6 reviews
Rebecca Foulger (Genomics England curator)
PMID:30561534. Berkovic et al., 2019 report phenotypes of patients with CLN6 pathogenic variants from 13 unrelated families (homozygous in 4 families and compound het in 9 families). The typical presentation was progressive myoclonus epilepsy with debilitating myoclonic seizures and relatively infrequent tonic-clonic seizures.Created: 28 Oct 2019, 12:16 p.m. | Last Modified: 28 Oct 2019, 12:16 p.m.
Panel Version: 1.398
PMID:31216804. Zhang et al. 2019 identify the pathogenic gene variants and clinical phenotype features of 26 children with progressive myoclonic epilepsy. 1 patient had a variant in CLN6 (full English text not available).Created: 28 Oct 2019, 11:29 a.m. | Last Modified: 28 Oct 2019, 11:29 a.m.
Panel Version: 1.394
Additional case in PMID:31029456 (Matsumoto et al., 2019) of Japanese boy with a homozygous C.794_976del variant p. (Ser265del) in CLN6. Symptoms include focal seizures.Created: 28 Oct 2019, 11:25 a.m. | Last Modified: 28 Oct 2019, 11:25 a.m.
Panel Version: 1.394
Comment on list classification: Updated rating from Red to Amber based on Amber review by Tracy Lester and PMID:21549341 (Arsov et al., 2011) where seizures are a consistent feature across families.Created: 22 Oct 2019, 9:50 a.m. | Last Modified: 22 Oct 2019, 9:50 a.m.
Panel Version: 1.377
Review and rating collated by Tracy Lester (Oxford Medical Genetics Laboratories Oxford University Hospitals NHS Foundation Trust, 2019_02_06) on behalf of Wessex and West Midlands GLH for GMS Neurology specialist test group, for Clinical Indication R59 'Early onset or syndromic epilepsy'. Review contributors: John Taylor and Helen Lord. Suggested gene rating: Amber.Created: 6 Aug 2019, 8:38 p.m. | Last Modified: 6 Aug 2019, 8:38 p.m.
Panel Version: 1.189
Tracy Lester (Genetics laboratory, Oxford UK)
Could neuronal Ceroid-Lipofuscinoses be tested through a different referral pathway? AR neuronal ceroid lipofuscinosis 6 - clinical course includes seizures. Another type is known as Kufs type (adult onset) of which there is an A and B sub-type - A is characterised by myoclonic epilepsy and B is characterised by dementia. Arsov et al, 2011 - 3 families with AR Kufs disease - hom or compound het mutations in CLN6 - mutations then found in 4 additional families with Kuffs disease - yielding a total of 9 different pathogenic mutations. All patients from the 7 families had progressive myoclonic epilepsy followed by dementia - consistent with type A.Created: 6 Aug 2019, 8:31 p.m. | Last Modified: 6 Aug 2019, 8:31 p.m.
Panel Version: 1.188
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Ceroid lipofuscinosis neuronal, 6, 601780; Ceroid lipofuscinosis, neuronal Kufs type adult onset, 204300
Publications
Amy McTague (UCL Institute of Child Health)
Natalie Trump (NHS - Great Ormond Street Hospital)
Manju Kurian (UCL-Institute of Child Health)
Richard Scott (North Thames GMC/UCL)
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Amber
- Wessex and West Midlands GLH
- NHS GMS
- Expert
- Phenotypes
-
- Ceroid lipofuscinosis, neuronal, 6, 601780
- Ceroid lipofuscinosis, neuronal, Kufs type, adult onset, 204300
- OMIM
- 606725
- Clinvar variants
- Variants in CLN6
- Penetrance
- None
- Publications
- Panels with this gene
-
- Childhood onset dystonia, chorea or related movement disorder
- Neuronal ceroid lipofuscinosis
- Undiagnosed metabolic disorders
- Adult onset neurodegenerative disorder
- Hyperammonaemia
- Ataxia and cerebellar anomalies - narrow panel
- Early onset or syndromic epilepsy
- Structural eye disease
- Intellectual disability
- Likely inborn error of metabolism
- Hereditary ataxia with onset in adulthood
- Retinal disorders
- Hereditary ataxia
- Fetal anomalies
- DDG2P
- Glaucoma (developmental)
- Lysosomal storage disorder
History Filter Activity
Set publications
Rebecca Foulger (Genomics England curator)Publications for gene: CLN6 were set to 21549341; 31029456; 31216804
Set publications
Rebecca Foulger (Genomics England curator)Publications for gene: CLN6 were set to 21549341; 31029456
Set publications
Rebecca Foulger (Genomics England curator)Publications for gene: CLN6 were set to 21549341
Entity classified by Genomics England curator
Rebecca Foulger (Genomics England curator)Gene: cln6 has been classified as Amber List (Moderate Evidence).
Set mode of inheritance
Rebecca Foulger (Genomics England curator)Mode of inheritance for gene: CLN6 was changed from to BIALLELIC, autosomal or pseudoautosomal
Set publications
Rebecca Foulger (Genomics England curator)Publications for gene: CLN6 were set to
Added New Source
Rebecca Foulger (Genomics England curator)Source Wessex and West Midlands GLH was added to CLN6.
Added New Source
Rebecca Foulger (Genomics England curator)Source NHS GMS was added to CLN6.
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for gene: CLN6 were changed from to Ceroid lipofuscinosis, neuronal, 6, 601780; Ceroid lipofuscinosis, neuronal, Kufs type, adult onset, 204300
Panel promoted to version 1.0
Sarah Leigh (Genomics England Curator)Sarah Leigh: Associated with phenotypes in
Added New Source
Sarah Leigh (Genomics England Curator)CLN6 was added to Genetic Epilepsy Syndromes panel. Sources: Expert,Expert Review Red
Created
Sarah Leigh (Genomics England Curator)CLN6 was created by Sarah Leigh