Early onset or syndromic epilepsy
Gene: SLC2A1EnsemblGeneIds (GRCh38): ENSG00000117394
EnsemblGeneIds (GRCh37): ENSG00000117394
OMIM: 138140, Gene2Phenotype
SLC2A1 is in 24 panels
9 reviews
Rebecca Foulger (Genomics England curator)
Review and rating collated by Tracy Lester (Oxford Medical Genetics Laboratories Oxford University Hospitals NHS Foundation Trust, 2019_02_06) on behalf of Wessex and West Midlands GLH for GMS Neurology specialist test group, for Clinical Indication R59 'Early onset or syndromic epilepsy'. Review contributors: John Taylor and Helen Lord. Suggested gene rating: Green.Created: 6 Aug 2019, 8:38 p.m. | Last Modified: 6 Aug 2019, 8:38 p.m.
Panel Version: 1.189
Tracy Lester (Genetics laboratory, Oxford UK)
AD & AR GLUT1 deficiency syndrome, AD stomatin-deficient cryohydrocytosis & AD generalsied idiopathic epilepsy all of these have epilepsy as a feature of disease. Also AD Dystonia type 9 - of which seizures are sometimes observed.Created: 6 Aug 2019, 8:31 p.m. | Last Modified: 6 Aug 2019, 8:31 p.m.
Panel Version: 1.188
Mode of inheritance
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Phenotypes
Dystonia 9,601042; GLUT1 deficiency syndrome 1, infantile onset, severe,606777; GLUT1 deficiency syndrome 2, childhood onset,612126; Stomatin-deficient cryohydrocytosis with neurologic defects,608885; {Epilepsy, idiopathic generalized, susceptibility to, 12},614847
Publications
Sarah Leigh (Genomics England Curator)
Comment on mode of inheritance: GLUT1 deficiency syndrome 1, infantile onset, severe 606777 can be mono or biallelic, the other phenotypes associated with variants in the SLC2A1 gene are all monoallelicCreated: 4 Apr 2018, 3:49 p.m.
Amy McTague (UCL Institute of Child Health)
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Dystonia 9
Publications
- Weber et al (2011) Neurology 77: 959-964
Variants in this GENE are reported as part of current diagnostic practice
Natalie Trump (NHS - Great Ormond Street Hospital)
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Dystonia 9
Publications
- Weber et al (2011) Neurology 77: 959-964
Variants in this GENE are reported as part of current diagnostic practice
Manju Kurian (UCL-Institute of Child Health)
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Dystonia 9
Publications
- Weber et al (2011) Neurology 77: 959-964
Variants in this GENE are reported as part of current diagnostic practice
Richard Scott (North Thames GMC/UCL)
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Dystonia 9
Publications
- Weber et al (2011) Neurology 77: 959-964
Variants in this GENE are reported as part of current diagnostic practice
Richard Scott (Genomics England Curator)
Comment on list classification: okCreated: 8 May 2016, 7:03 p.m.
Ellen McDonagh (Genomics England Curator)
Added the tag 'treatable' as a ketogenic diet can help ameloriate symptoms (PMID: 29303961).Created: 19 Aug 2019, 9:58 a.m. | Last Modified: 19 Aug 2019, 9:58 a.m.
Panel Version: 1.254
Comment on mode of inheritance: Confirmed with reviewer that both is relevant (OMIM).Created: 29 Jan 2016, 5:23 p.m.
Publications
Details
- Mode of Inheritance
- BOTH monoallelic and biallelic, autosomal or pseudoautosomal
- Sources
-
- Wessex and West Midlands GLH
- NHS GMS
- NIHRBR-RD Consortium SPEED_v3.0_20170404
- Victorian Clinical Genetics Services
- UKGTN
- Expert
- Expert Review Green
- Phenotypes
-
- Dystonia 9 601042 AD
- GLUT1 deficiency syndrome 1, infantile onset, severe 606777 AD, AR
- GLUT1 deficiency syndrome 2, childhood onset 612126 AD
- Stomatin-deficient cryohydrocytosis with neurologic defects 608885 AD
- {Epilepsy, idiopathic generalized, susceptibility to, 12} 614847
- Tags
- OMIM
- 138140
- Clinvar variants
- Variants in SLC2A1
- Penetrance
- None
- Publications
- Panels with this gene
-
- Cytopenias and congenital anaemias
- Adult onset dystonia, chorea or related movement disorder
- DDG2P
- Rare anaemia
- COVID-19 research
- Skeletal muscle channelopathy
- Adult onset neurodegenerative disorder
- Bilateral congenital or childhood onset cataracts
- Likely inborn error of metabolism
- Hereditary ataxia with onset in adulthood
- Early onset dystonia
- Ataxia and cerebellar anomalies - narrow panel
- Hereditary spastic paraplegia
- Structural eye disease
- Hereditary ataxia
- Early onset or syndromic epilepsy
- Brain channelopathy
- Skeletal Muscle Channelopathies
- Fetal anomalies
- Paroxysmal central nervous system disorders
- Undiagnosed metabolic disorders
- Childhood onset hereditary spastic paraplegia
- Intellectual disability
- Childhood onset dystonia, chorea or related movement disorder
History Filter Activity
Added Tag
Ellen McDonagh (Genomics England Curator)Tag treatable tag was added to gene: SLC2A1.
Added New Source
Rebecca Foulger (Genomics England curator)Source Wessex and West Midlands GLH was added to SLC2A1.
Added New Source
Rebecca Foulger (Genomics England curator)Source NHS GMS was added to SLC2A1.
Panel promoted to version 1.0
Sarah Leigh (Genomics England Curator)Ellen McDonagh: Comment on mode of inheritance
Added New Source
Sarah Leigh (Genomics England Curator)NIHRBR-RD Consortium SPEED_v3.0_20170404 was added to SLC2A1. Panel: Genetic Epilepsy Syndromes
Added New Source
Sarah Leigh (Genomics England Curator)Victorian Clinical Genetics Services was added to SLC2A1. Panel: Genetic Epilepsy Syndromes
Set mode of inheritance
Sarah Leigh (Genomics England Curator)Mode of inheritance for SLC2A1 was changed from BOTH monoallelic and biallelic, autosomal or pseudoautosomal to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for SLC2A1 were set to Dystonia 9 601042 AD; GLUT1 deficiency syndrome 1, infantile onset, severe 606777 AD, AR; GLUT1 deficiency syndrome 2, childhood onset 612126 AD; Stomatin-deficient cryohydrocytosis with neurologic defects 608885 AD; {Epilepsy, idiopathic generalized, susceptibility to, 12} 614847
Set publications
Sarah Leigh (Genomics England Curator)Publications for SLC2A1 were set to 22282645; 20574033; 21832227
Added New Source
Sarah Leigh (Genomics England Curator)SLC2A1 was added to Genetic Epilepsy Syndromes panel. Sources: Expert Review Green,Expert,UKGTN
Created
Sarah Leigh (Genomics England Curator)SLC2A1 was created by Sarah Leigh