Skeletal dysplasia
Gene: ALG9EnsemblGeneIds (GRCh38): ENSG00000086848
EnsemblGeneIds (GRCh37): ENSG00000086848
OMIM: 606941, Gene2Phenotype
ALG9 is in 13 panels
4 reviews
Tracy Lester (Genetics laboratory, Oxford UK)
Tham et al 2016 report 2 unrelated families with SD and a splice-site variant, they note that other cases reported with missense variants did not have SD. 5/7 Arabic cases reported by Alshubi et al 2017 had mild SD (all with same variant).; Review on behalf of Tracy LesterCreated: 6 Mar 2019, 11:44 a.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Congenital disorder of glycosylation, type Il 608776; Gillessen-Kaesbach-Nishimura syndrome 263210
Publications
Eleanor Williams (Genomics England Curator)
This gene was part of an initial gene list collated by Tracy Lester, Oxford Medical Genetics Laboratories, Oxford University Hospitals NHS Foundation Trust, February 2019 on behalf of the GMS Musculoskeletal Specialist Group; Gene symbol submitted: ALG9; Initial rating suggestion: greenCreated: 6 Mar 2019, 11:36 a.m.
Sarah Leigh (Genomics England Curator)
Comment when marking as ready: Associated with phenotype in OMIM and G2P. At least three variants reported in the overlapping phenotypesCreated: 1 Aug 2016, 12:38 p.m.
Ana Beleza (Bristol Regional Genetics Service)
Tier 2Created: 15 Jun 2016, 2:02 p.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Congenital disorder of glycosylation, type Il 608776; Gillessen-Kaesbach-Nishimura syndrome 263210
Variants in this GENE are reported as part of current diagnostic practice
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- NHS GMS
- Expert Review Green
- Phenotypes
-
- Gillessen-Kaesbach-Nishimura syndrome 263210
- Congenital disorder of glycosylation, type Il 608776
- Gillessen-Kaesbach-Nishimura syndrome 263210
- OMIM
- 606941
- Clinvar variants
- Variants in ALG9
- Penetrance
- Complete
- Publications
- Panels with this gene
-
- DDG2P
- Cystic kidney disease
- Early onset or syndromic epilepsy
- Skeletal dysplasia
- Fetal anomalies
- Clefting
- Undiagnosed metabolic disorders
- Polycystic liver disease
- Fetal hydrops
- Intellectual disability
- Congenital disorders of glycosylation
- Childhood onset dystonia, chorea or related movement disorder
- Likely inborn error of metabolism
History Filter Activity
Set Phenotypes
Eleanor Williams (Genomics England Curator)Added phenotypes Gillessen-Kaesbach-Nishimura syndrome 263210; Congenital disorder of glycosylation, type Il 608776 for gene: ALG9
Added New Source, Status Update
Eleanor Williams (Genomics England Curator)Source NHS GMS was added to ALG9. Rating Changed from Green List (high evidence) to Green List (high evidence)
panel promoted to version 1
Sarah Leigh (Genomics England Curator)Promoted to version 1 9th August 2016
Gene classified by Genomics England curator
Sarah Leigh (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for ALG9 were set to Congenital disorder of glycosylation, type Il 608776; Gillessen-Kaesbach-Nishimura syndrome 263210
Gene classified by Genomics England curator
Sarah Leigh (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Set publications
Sarah Leigh (Genomics England Curator)Publications for ALG9 were set to 25966638
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for ALG9 were set to Gillessen-Kaesbach-Nishimura syndrome 263210
Set Mode of Inheritance
Sarah Leigh (Genomics England Curator)Mode of inheritance for ALG9 was changed to BIALLELIC, autosomal or pseudoautosomal
Added New Source
Sarah Leigh (Genomics England Curator)ALG9 was added to Unexplained skeletal dysplasiapanel. Sources:
Created
Sarah Leigh (Genomics England Curator)ALG9 was created by sleigh