Skeletal dysplasia
Gene: ATP7AEnsemblGeneIds (GRCh38): ENSG00000165240
EnsemblGeneIds (GRCh37): ENSG00000165240
OMIM: 300011, Gene2Phenotype
ATP7A is in 19 panels
4 reviews
Tracy Lester (Genetics laboratory, Oxford UK)
Neither gene nor any of the OMIM disorders are listed in the SD nosology paper. Occipital horn syndrome is associated with hyperestensible joints and multiple skeletal abnormlaities (OMIM) - at least 3 cases reported. Green if fits SD.; Review on behalf of Tracy LesterCreated: 6 Mar 2019, 11:44 a.m.
Mode of inheritance
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Phenotypes
Menkes disease 309400; Occipital horn syndrome 304150; Spinal muscular atrophy, distal, 300489
Eleanor Williams (Genomics England Curator)
This gene was part of an initial gene list collated by Tracy Lester, Oxford Medical Genetics Laboratories, Oxford University Hospitals NHS Foundation Trust, February 2019 on behalf of the GMS Musculoskeletal Specialist Group; Gene symbol submitted: ATP7A; Initial rating suggestion: Green if SDCreated: 6 Mar 2019, 11:36 a.m.
Sarah Leigh (Genomics England Curator)
Comment when marking as ready: Associated with phenotype in OMIM and G2P. Numerous variants reported in Menkes disease 309400; Occipital horn syndrome 304150 and at least two variants reported in Spinal muscular atrophy, distal, 300489Created: 27 Jul 2016, 1:28 p.m.
Ana Beleza (Bristol Regional Genetics Service)
Tier 2Created: 17 Jun 2016, 8:01 a.m.
Mode of inheritance
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Phenotypes
Menkes disease 309400; Occipital horn syndrome 304150; Spinal muscular atrophy, distal, 300489
Variants in this GENE are reported as part of current diagnostic practice
Details
- Mode of Inheritance
- X-LINKED: hemizygous mutation in males, biallelic mutations in females
- Sources
-
- NHS GMS
- Expert Review Green
- UKGTN
- Emory Genetics Laboratory
- Expert list
- Radboud University Medical Center, Nijmegen
- Phenotypes
-
- Spinal muscular atrophy, distal, 300489
- Menkes disease 309400
- Occipital horn syndrome 304150
- OMIM
- 300011
- Clinvar variants
- Variants in ATP7A
- Penetrance
- Complete
- Panels with this gene
-
- Rare genetic inflammatory skin disorders
- Hereditary neuropathy
- Thoracic aortic aneurysm or dissection (GMS)
- DDG2P
- Inherited white matter disorders
- Cerebral vascular malformations
- Pneumothorax - familial
- Likely inborn error of metabolism
- Paediatric motor neuronopathies
- Hereditary neuropathy or pain disorder
- Thoracic aortic aneurysm or dissection
- Ehlers Danlos syndrome with a likely monogenic cause
- Early onset or syndromic epilepsy
- Skeletal dysplasia
- Fetal anomalies
- Undiagnosed metabolic disorders
- White matter disorders and cerebral calcification - narrow panel
- Intellectual disability
- Childhood onset dystonia, chorea or related movement disorder
History Filter Activity
Set Phenotypes
Eleanor Williams (Genomics England Curator)Added phenotypes Spinal muscular atrophy, distal, 300489; Menkes disease 309400; Occipital horn syndrome 304150 for gene: ATP7A
Added New Source, Status Update
Eleanor Williams (Genomics England Curator)Source NHS GMS was added to ATP7A. Rating Changed from Green List (high evidence) to Green List (high evidence)
panel promoted to version 1
Sarah Leigh (Genomics England Curator)Promoted to version 1 9th August 2016
Gene classified by Genomics England curator
Sarah Leigh (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Upload gene information
Sarah Leigh (Genomics England Curator)ATP7A was added to Unexplained skeletal dysplasiapanel. Sources: Emory Genetics Laboratory,Expert list,Radboud University Medical Center, Nijmegen,UKGTN
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for ATP7A were set to Menkes disease 309400; Occipital horn syndrome 304150; Spinal muscular atrophy, distal, 300489
Set Mode of Inheritance
Sarah Leigh (Genomics England Curator)Mode of inheritance for ATP7A was changed to X-LINKED: hemizygous mutation in males, biallelic mutations in females
Gene classified by Genomics England curator
Sarah Leigh (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Created
Sarah Leigh (Genomics England Curator)ATP7A was created by sleigh
Added New Source
Sarah Leigh (Genomics England Curator)ATP7A was added to Unexplained skeletal dysplasiapanel. Sources: