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  3. KDM6B
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Fetal anomalies

Gene: KDM6B

Amber List (moderate evidence)
KDM6B (lysine demethylase 6B)
EnsemblGeneIds (GRCh38): ENSG00000132510
EnsemblGeneIds (GRCh37): ENSG00000132510
OMIM: 611577, Gene2Phenotype
KDM6B is in 4 panels

2 reviews

Arina Puzriakova (Genomics England Curator)

I don't know

New gene added to this panel with an Amber rating, inline with the recent review by the R21 Clinical Oversight Group.
Created: 5 Sep 2025, 4:41 p.m. | Last Modified: 5 Sep 2025, 4:41 p.m.
Panel Version: 6.29
Created: 5 Sep 2025, 4:41 p.m.
Last Modified: 5 Sep 2025, 4:41 p.m.
Panel version: 6.29

Sunayna Best (Leeds Teaching Hospitals NHS Trust)

I don't know

This gene and phenotype were reviewed during meetings in June & July 2025. The meetings included representatives of the North Thames and Central & South R21 testing GLHs and from the R21 Clinical Oversight Group. Clinical review and curation was performed by Natalie Chandler & Elizabeth Scotchman (North Thames GLH), Natalie Bibb, Stephanie Allen & Sarah Graham (Central & South GLH) and Alice Gardham, Esther Kinning, Vicki Harrison, Anna DeBurca, Natalie Canham, Elizabeth Wall, Sunayna Best, Soo-Mi Park & Sahar Mansour (R21 Clinical Oversight Group).
Created: 5 Sep 2025, 4:31 p.m. | Last Modified: 5 Sep 2025, 4:31 p.m.
Panel Version: 6.28
Rots et al, 2023. 85 patient series. Congenital anomaliews: CHD in 8/64, cleft palate/lip/uvula in 3/67, genitourinary abnormalities in 6/62. Musculoskeletal features e.g. syndactyly (6/66), short fingers or toes (6/64), broad fingers/toes/feet (13/65) think would be hard to see on an antenatal scan. Neurodevelopmental problems in all individuals. Thorough functional work including Drosophila model. Think probably merits inclusion on panel but confirm with team agree given the less frequent association with congenital anomalies detectable on scan.
Created: 5 Sep 2025, 2:55 p.m. | Last Modified: 5 Sep 2025, 2:55 p.m.
Panel Version: 6.24

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted

Phenotypes
Stolerman neurodevelopmental syndrome, OMIM:618505

Publications

Created: 5 Sep 2025, 2:55 p.m.
Last Modified: 5 Sep 2025, 2:55 p.m.
Panel version: 6.28

Details

Mode of Inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
Phenotypes
  • Stolerman neurodevelopmental syndrome, OMIM:618505
OMIM
611577
Clinvar variants
Variants in KDM6B
Penetrance
None
Publications
Panels with this gene

History Filter Activity

5 Sep 2025, Gel status: 2

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes

Arina Puzriakova (Genomics England Curator)

gene: KDM6B was added gene: KDM6B was added to Fetal anomalies. Sources: Expert Review Amber Mode of inheritance for gene: KDM6B was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: KDM6B were set to 31124270; 37196654 Phenotypes for gene: KDM6B were set to Stolerman neurodevelopmental syndrome, OMIM:618505