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  2. Primary immunodeficiency or monogenic inflammatory bowel disease
  3. AGR2
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Primary immunodeficiency or monogenic inflammatory bowel disease

Gene: AGR2

Green List (high evidence)
AGR2 (anterior gradient 2, protein disulphide isomerase family member)
EnsemblGeneIds (GRCh38): ENSG00000106541
EnsemblGeneIds (GRCh37): ENSG00000106541
OMIM: 606358, Gene2Phenotype
AGR2 is in 3 panels

3 reviews

Achchuthan Shanmugasundram (Genomics England Curator)

Green List (high evidence)

The rating of this gene has been updated to Green following NHS Genomic Medicine Service approval.
Created: 2 Feb 2023, 11:32 a.m. | Last Modified: 2 Feb 2023, 11:32 a.m.
Panel Version: 3.4
Created: 2 Feb 2023, 11:32 a.m.
Last Modified: 2 Feb 2023, 11:32 a.m.
Panel version: 3.4

Arina Puzriakova (Genomics England Curator)

Comment on list classification: New gene added by Dmitrijs Rots (RadboudUMC). This gene is not associated with a phenotype in OMIM or Gene2Phenotype. There is enough evidence to support a gene-disease association. This gene should be rated Green.
Created: 4 Jan 2022, 4:11 p.m. | Last Modified: 4 Jan 2022, 4:11 p.m.
Panel Version: 2.503
Created: 4 Jan 2022, 4:11 p.m.
Last Modified: 4 Jan 2022, 4:11 p.m.
Panel version: 2.503

Dmitrijs Rots (Children's Clinical University Hospital)

Green List (high evidence)

13 individuals reported in PMID: 34952832 with Cystic Fibrosis like phenotype, including respiratory infections present in 13/13 individuals.
Sources: Literature
Created: 28 Dec 2021, 8:22 a.m.

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
CF-like disorder

Publications

Created: 28 Dec 2021, 8:22 a.m.

Panel version: 2.498

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • NHS GMS
  • Expert Review Green
Phenotypes
  • Cystic fibrosis-like syndrome
OMIM
606358
Clinvar variants
Variants in AGR2
Penetrance
Complete
Publications
Panels with this gene

History Filter Activity

2 Feb 2023, Gel status: 3

Removed Tag

Achchuthan Shanmugasundram (Genomics England Curator)

Tag Q1_22_rating was removed from gene: AGR2.

2 Feb 2023, Gel status: 3

Added New Source, Added New Source, Status Update

Achchuthan Shanmugasundram (Genomics England Curator)

Source Expert Review Green was added to AGR2. Source NHS GMS was added to AGR2. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)

5 Jan 2022, Gel status: 2

Added Tag

Arina Puzriakova (Genomics England Curator)

Tag Q1_22_rating tag was added to gene: AGR2.

4 Jan 2022, Gel status: 2

Entity classified by Genomics England curator

Arina Puzriakova (Genomics England Curator)

Gene: agr2 has been classified as Amber List (Moderate Evidence).

4 Jan 2022, Gel status: 0

Set publications

Arina Puzriakova (Genomics England Curator)

Publications for gene: AGR2 were set to PMID: 34952832

4 Jan 2022, Gel status: 0

Set Phenotypes

Arina Puzriakova (Genomics England Curator)

Phenotypes for gene: AGR2 were changed from CF-like disorder to Cystic fibrosis-like syndrome

28 Dec 2021, Gel status: 0

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes, Set penetrance

Dmitrijs Rots (Children's Clinical University Hospital)

gene: AGR2 was added gene: AGR2 was added to Primary immunodeficiency. Sources: Literature Mode of inheritance for gene: AGR2 was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: AGR2 were set to PMID: 34952832 Phenotypes for gene: AGR2 were set to CF-like disorder Penetrance for gene: AGR2 were set to Complete Review for gene: AGR2 was set to GREEN