Primary immunodeficiency or monogenic inflammatory bowel disease
Gene: IL12B
agree with green geneCreated: 17 Sep 2019, 3:18 p.m. | Last Modified: 17 Sep 2019, 3:18 p.m.
Panel Version: 1.94
YES- this is covered on our targeted exomeCreated: 17 Sep 2019, 3:18 p.m. | Last Modified: 17 Sep 2019, 3:18 p.m.
Panel Version: 1.94
Gene rating submitted by Kimberly Gilmour and Austen Worth on behalf of London North GLH for the GMS Immunology specialist test group. As discussed with the GMS Immunology Specialist Test Group during webex call 28th March 2019 and confirmed in follow up email 6th September the Specialist Test Group all agreed there is enough evidence to rate this gene Green.Created: 17 Sep 2019, 3:18 p.m. | Last Modified: 17 Sep 2019, 3:18 p.m.
Panel Version: 1.94
Gene rating submitted by Tracy Briggs, David Gokhale and Abigal Rousseau on behalf of North West GLH for the GMS Immunology specialist test group. As discussed with the GMS Immunology Specialist Test Group during webex call 28th March 2019 and confirmed in follow up email on 20th June the Specialist Test Group all agreed there is enough evidence to rate this gene Green.Created: 17 Sep 2019, 3:18 p.m. | Last Modified: 17 Sep 2019, 3:18 p.m.
Panel Version: 1.94
OriginaI Metadata from IUIS classification table (February, 2018) downloaded 20180614. IUIS Genetic defect (original gene symbol in IUIS download): IL12B .PanelApp HGNC gene symbol check: IL12B . IUIS Disease: IL-12p40 (IL-12 and IL-23) deficiency . IUIS Inheritance: AR .T cells: N/A, .B cells: N/A, .IUIS Other affected cells: M. IUIS Associated features: Susceptibility to mycobacteria and Salmonella. IUIS Major category: Defects in Intrinsic and Innate Immunity. IUIS Subcategory: Mendelian Susceptibility to mycobacterial disease (MSMD)Created: 2 Jul 2018, 10:35 a.m.
Comment on list classification: Changed Amber to Green from external expert review and further publications to support gene-disease association. More than there unrelated cases, pathogenic variants have been found in 49 patients from 30 kindreds originating from India, Iran, Pakistan, Saudi Arabia and Tunisia.Created: 27 Jun 2018, 10:56 a.m.
Comment on publications: added publication to support gene-disease associationCreated: 27 Jun 2018, 10:54 a.m.
This gene was absent from the original PanelApp PID panel dataset (review April 2018). However it was listed in external expert immunodeficiency diagnostic gene list(s) GOSH or GRID. In this combined PID panel, this gene has been rated as AMBER and needs further curational review to assess pertinence prior to v1.Created: 20 Apr 2018, 12:25 p.m.
Original metadata downloaded from ESID Registry. ESID_Gene_original: IL12B, PanelApp HGNC gene symbol check: IL12B, ESID classification: Main_category/ Sub_category/ PID_Diagnosis Phagocytic disorders / Defects with susceptibility to mycobacterial infection (MSMD) / Defects with susceptibility to mycobacterial infection (MSMD)Created: 17 Apr 2018, 12:29 p.m.
Original metadata supplied by GRID. GRID Gene Symbol HGNC PanelApp check: IL12B, GRID_Gene_Symbol: IL12B, GRID_Transcript_ENS_Community submitted: ENST00000231228, GRID_Transcript_RefSeq: NM_002187.2, GRID_Transcript_ENS_used_on_Production: ENST00000231228Created: 17 Apr 2018, 12:12 p.m.
Source NHS GMS was added to IL12B.
Source North West GLH was added to IL12B.
Source London North GLH was added to IL12B.
2018-07-12 Louise Daugherty (Genomics England Curator) promoted panel to v1.0. Reviews were assessed, and panel was revised according to expert reviews and further in-house curation based on PanelApp guidelines. Previous panels (A- or hypo-gammaglobulinaemia, Congenital neutropaenia, Agranulocytosis, Combined B and T cell defect, Inherited complement deficiency and SCID panels) that were merged with this panel, were checked again for any changes/new reviews prior to versioning of this panel, these merged panels are now retired/made internal.
Phenotypes for gene IL12B were set to Immunodeficiency 29, mycobacteriosis, 614890, Defects with susceptibility to mycobacterial infection (MSMD), Mendelian susceptibility to mycobacterial diseases due to complete IL12B deficiency, Susceptibility to mycobacteria and Salmonella, Defects in Intrinsic and Innate Immunity
Gene: il12b has been classified as Green List (High Evidence).
Gene: il12b has been classified as Green List (High Evidence).
Phenotypes for gene: IL12B were set to Immunodeficiency 29, mycobacteriosis, 614890; Defects with susceptibility to mycobacterial infection (MSMD); Mendelian susceptibility to mycobacterial diseases due to complete IL12B deficiency
Publications for gene: IL12B were set to 9854038; 11753820; 15322986; 24127073
IUIS Classification February 2018 was added to IL12B. Panel: Primary immunodeficiency disorders
Victorian Clinical Genetics Services was added to IL12B. Panel: Primary immunodeficiency disorders
Expert Review Amber was added to IL12B. Panel: Primary immunodeficiency disorders
ESID Registry 20171117 was added to IL12B. Panel: Primary immunodeficiency disorders Phenotypes for gene IL12B were set to Immunodeficiency 29, mycobacteriosis, Defects with susceptibility to mycobacterial infection (MSMD)
Phenotypes for gene IL12B were set to Immunodeficiency 29, mycobacteriosis
IL12B was added to Primary immunodeficiency disorders panel. Sources: GRID V2.0
IL12B was created by Louise Daugherty