Genes in panel
- ACD 4
- ACP5 5
- ADA 9
- ADA2 5
- ADAM17 7
- ADAR 4
- AGR2 3
- AICDA 7
- AIRE 6
- AK2 7
- ALPI 4
- ALPK1 2
- ANKZF1 3
- AP3B1 5
- ARPC1B 5
- ARPC5 3
- ATM 4
- ATP6AP1 4
- B2M 5
- BACH2 5
- BCL10 6
- BLM 4
- BLNK 7
- BLOC1S6 5
- BTK 8
- C17orf62 4
- C1QA 4
- C1QB 5
- C1QC 4
- C1R 4
- C1S 4
- C2 7
- C2orf69 3
- C3 4
- C4A 4
- C4B 4
- C5 4
- C6 4
- C7 4
- C8A 4
- C8B 4
- C9 4
- CARD11 5
- CARD14 5
- CARD9 4
- CARMIL2 6
- CASP8 5
- CBLB 3
- CCBE1 5
- CD19 6
- CD247 9
- CD27 6
- CD3D 8
- CD3E 8
- CD3G 5
- CD4 7
- CD40 5
- CD40LG 5
- CD46 5
- CD55 4
- CD59 4
- CD70 5
- CD79A 7
- CD79B 6
- CD81 5
- CDC42 3
- CDCA7 4
- CEBPE 5
- CFD 4
- CFH 5
- CFI 4
- CFP 4
- CHD7 4
- CIB1 3
- CIITA 6
- CLPB 5
- COL7A1 4
- COPA 6
- CORO1A 7
- CR2 6
- CREBBP 3
- CSF2RA 4
- CSF2RB 5
- CSF3R 6
- CTLA4 7
- CTPS1 5
- CTSC 4
- CXCR2 6
- CXCR4 6
- CYBA 4
- CYBB 5
- DBR1 3
- DCLRE1C 8
- DEF6 5
- DIAPH1 3
- DKC1 4
- DNAJC21 4
- DNASE1L3 7
- DNASE2 4
- DNMT3B 6
- DOCK11 3
- DOCK2 5
- DOCK8 7
- DPP9 3
- DUT 3
- EFL1 3
- ELANE 6
- ELF4 9
- EP300 3
- EPG5 6
- ERCC6L2 4
- EXTL3 6
- F12 4
- FADD 7
- FAS 5
- FASLG 6
- FAT4 5
- FCHO1 4
- FERMT1 2
- FERMT3 4
- FNIP1 2
- FOXN1 9
- FOXP3 5
- G6PC3 6
- G6PD 4
- GATA1 5
- GATA2 4
- GFI1 6
- GINS1 4
- GNAI2 3
- GUCY2C 5
- HAVCR2 4
- HAX1 8
- HELLS 4
- HMOX1 5
- HPS1 4
- HPS4 4
- HPS6 4
- HTRA2 5
- HYOU1 6
- ICOS 7
- IFIH1 5
- IFNAR1 3
- IFNAR2 5
- IFNGR1 4
- IFNGR2 4
- IGHM 6
- IGLL1 6
- IKBKB 8
- IKBKG 5
- IKZF1 6
- IKZF2 5
- IKZF3 2
- IL10 5
- IL10RA 5
- IL10RB 5
- IL12B 4
- IL12RB1 4
- IL17RA 5
- IL17RC 4
- IL1RN 6
- IL21R 5
- IL23R 5
- IL2RA 5
- IL2RB 4
- IL2RG 8
- IL36RN 6
- IL6R 6
- IL6ST 7
- IL7 2
- IL7R 8
- IRAK4 4
- IRF1 3
- IRF2BP2 5
- IRF4 5
- IRF7 4
- IRF8 4
- ISG15 4
- ITCH 5
- ITGB2 4
- ITK 7
- ITPR3 2
- JAGN1 4
- JAK1 6
- JAK3 8
- KDM6A 5
- KMT2A 4
- KMT2D 5
- LACC1 3
- LAMTOR2 6
- LAT 6
- LCK 5
- LCP2 5
- LIG1 6
- LIG4 8
- LPIN2 6
- LRBA 6
- LYN 3
- LYST 6
- MAGT1 7
- MALT1 6
- MAP3K14 6
- MCM4 7
- MCTS1 3
- MECOM 3
- MEFV 6
- MOGS 5
- MPEG1 2
- MSN 5
- MTHFD1 6
- MVK 6
- MYD88 6
- MYO5B 8
- MYSM1 5
- NBN 5
- NCF1 5
- NCF2 5
- NCF4 6
- NCKAP1L 2
- NFAT5 6
- NFE2L2 4
- NFKB1 5
- NFKB2 7
- NFKBIA 6
- NHEJ1 10
- NHP2 5
- NLRC4 6
- NLRP1 10
- NLRP12 6
- NLRP3 6
- NOD2 7
- NPC1 3
- NSMCE3 4
- NUDCD3 2
- OAS1 5
- ORAI1 8
- OTULIN 8
- PARN 5
- PAX1 3
- PEPD 5
- PGM3 5
- PI4KA 2
- PIK3CD 10
- PIK3CG 4
- PIK3R1 8
- PLCG2 9
- PLG 3
- PNP 7
- POLA1 5
- POLD1 6
- POLE 6
- POMP 2
- PRF1 5
- PRIM1 3
- PRKCD 6
- PRKDC 5
- PSMB10 7
- PSMB8 7
- PSTPIP1 6
- PTCRA 3
- PTPN2 5
- PTPRC 8
- RAB27A 6
- RAC2 9
- RAG1 8
- RAG2 8
- RANBP2 4
- RASGRP1 6
- RBCK1 6
- RECQL4 4
- REL 5
- RELA 6
- RELB 6
- RFX5 6
- RFXANK 6
- RFXAP 6
- RIPK1 7
- RMRP 8
- RNASEH2A 5
- RNASEH2B 5
- RNASEH2C 5
- RNF168 5
- RNU7-1 3
- RORC 5
- RPSA 5
- RTEL1 5
- SAMD9 4
- SAMD9L 7
- SAMHD1 5
- SASH3 4
- SBDS 6
- SEC61A1 7
- SERPING1 5
- SGPL1 5
- SH2D1A 5
- SKIV2L 6
- SLC29A3 5
- SLC35C1 5
- SLC37A4 6
- SLC39A4 4
- SLC39A7 5
- SLC46A1 5
- SLC7A7 4
- SLCO2A1 3
- SMARCAL1 6
- SMARCD2 4
- SNORA31 4
- SOCS1 2
- SP110 5
- SPI1 5
- SPINK5 6
- SPPL2A 5
- SRP54 4
- STAT1 5
- STAT2 5
- STAT3 5
- STAT4 6
- STAT5B 10
- STAT6 5
- STIM1 6
- STK4 6
- STX11 5
- STXBP2 5
- STXBP3 4
- SYK 3
- TAP1 5
- TAP2 5
- TAZ 6
- TBK1 7
- TBX1 9
- TCF3 10
- TCN2 10
- TET2 5
- TFRC 7
- TGFB1 4
- TGFBR1 2
- TGFBR2 2
- TICAM1 5
- TLR3 5
- TLR7 4
- TLR8 5
- TMC6 5
- TMC8 5
- TMEFF1 3
- TMEM173 7
- TNFAIP3 5
- TNFRSF1A 6
- TNFRSF9 4
- TOP2B 4
- TPP2 5
- TRAC 5
- TRAF3 5
- TRAF3IP2 8
- TREX1 5
- TRIM22 4
- TRNT1 4
- TTC37 6
- TTC7A 5
- TYK2 5
- UNC13D 5
- UNC93B1 5
- UNG 5
- USB1 4
- USP18 7
- VPS13B 5
- VPS45 5
- WAS 8
- WDR1 7
- WIPF1 5
- XIAP 6
- ZAP70 7
- ZBTB24 5
- ZNF341 5
- ZNFX1 4
- ANGPT1 2
- AP1S3 5
- AP3D1 3
- ATAD3A 2
- ATP6AP2 1
- BCL11B 4
- BIRC3 2
- BRF2 1
- CARD8 2
- CASP10 7
- CD48 3
- CD8A 4
- CFB 5
- CFTR 3
- CTC1 4
- DCLRE1B 9
- DUOX2 2
- ERBIN 3
- FCGR3A 3
- FGL2 2
- FGR 3
- FLT3LG 3
- FMNL2 2
- FOXI3 2
- FPR1 2
- GCC2 2
- GIMAP5 5
- GINS4 2
- GPR15 2
- GTF3A 2
- HCK 3
- HSPA1L 6
- IGKC 2
- IKBKE 2
- IL17F 3
- IL1R1 2
- IL21 4
- IL27RA 3
- IPO8 3
- IRF3 2
- IRF9 2
- ITGAV 1
- ITPKB 2
- IVNS1ABP 4
- KARS 4
- KCNA5 2
- KRAS 2
- LY9 2
- MAN2B2 4
- MBL2 2
- MKL1 5
- MPO 3
- MYB 2
- NCSTN 2
- NFATC1 2
- NFATC2 2
- NOP10 4
- NOX1 2
- NRAS 5
- OSMR 2
- PAX5 2
- PLCG1 1
- POLD3 2
- POLR3A 2
- POLR3C 2
- PSENEN 3
- PSMA3 6
- PSMB4 5
- PSMB9 5
- PTEN 5
- QSOX2 1
- RC3H1 4
- REXO2 2
- RHBDF2 2
- RHOH 4
- RNF31 7
- RNU4ATAC 3
- RNU6ATAC 1
- SCGN 2
- SENP7 1
- SEPT6 2
- SH2B3 2
- SHARPIN 2
- SIT1 3
- SLC19A1 1
- SLC30A2 2
- SLC9A3 3
- SRP72 2
- TAPBP 4
- TERC 3
- TERT 3
- TINF2 3
- TNFRSF11A 4
- TNFRSF13C 2
- ZBTB7B 2
- ABI3 1
- ACTB 2
- AMFR 2
- APOL1 2
- ARHGAP42 2
- ARHGEF1 2
- ASXL1 3
- ATG4A 2
- BRAF 1
- BRCA1 0
- BRCA2 0
- C8G 2
- CARD10 3
- CASP1 1
- CD274 2
- CD28 2
- CFHR1 4
- CFHR2 2
- CFHR3 4
- CFHR4 4
- CFHR5 6
- CHUK 2
- CLCN7 2
- CLEC7A 1
- CNBP 4
- COLEC11 2
- COPG1 2
- CRACR2A 2
- CSF2 2
- CSF3 1
- CTNNBL1 3
- CXorf36 1
- DDX58 1
- DGAT1 1
- DNAJC17 1
- DSG1 1
- EPCAM 2
- ERCC2 2
- ERCC3 2
- ERCC4 0
- EZR 2
- FAAP24 3
- FANCF 0
- FANCI 0
- FANCM 0
- FBF1 2
- FBRS 1
- FCGR1A 2
- FCGR2A 2
- FCGR2B 2
- FCGR3B 4
- FCGRT 2
- FCN3 4
- FOXM1 1
- FPR2 2
- FPR3 2
- GAD1 5
- GALE 1
- GIMAP6 2
- GTF2H5 1
- HS3ST6 2
- ICOSLG 4
- IFNG 2
- IGHG2 2
- IL12RB2 2
- IL17A 2
- IL18 2
- IL18BP 2
- IL22 2
- IL23A 2
- IL31RA 1
- IL37 2
- IL6 1
- INO80 6
- IRAK1 2
- IRAK2 1
- ITGAM 2
- LRRC32 2
- LRRC8A 6
- LSM11 2
- LY96 2
- LYZ 2
- MAP1LC3B2 2
- MAP2K1 1
- MAPK8 2
- MASP1 2
- MASP2 4
- MCM10 2
- MED13L 1
- MICA 1
- MPI 2
- MPL 1
- MR1 2
- MRE11 3
- MS4A1 3
- MSH6 3
- MTPAP 1
- MYOF 2
- NBAS 2
- NFKBID 3
- NOS2 2
- ODC1 1
- OSM 1
- OSTM1 2
- PARP1 1
- PDCD1 2
- PLD4 1
- PLEKHM1 2
- PMS2 5
- POLD2 2
- POLE2 2
- POLR3F 2
- POU2AF1 2
- PSEN1 3
- PSMG2 2
- PTPN1 1
- PTPN22 1
- PTPN6 2
- RAD50 2
- RAP1B 2
- RELN 1
- RET 3
- RGS10 3
- RHOG 2
- SAMD3 1
- SART3 3
- SAT1 1
- SEMA3E 3
- SH3BP2 3
- SH3GL1 1
- SH3KBP1 2
- SIRT1 2
- SLC13A4 1
- SLC35A1 1
- SNX10 1
- STAT5A 3
- STN1 1
- TBX21 2
- TCIRG1 1
- THBD 3
- TIRAP 2
- TKFC 1
- TLN1 1
- TNFRSF13B 8
- TNFRSF4 3
- TNFSF11 1
- TNFSF12 2
- TNFSF13 1
- TNFSF9 2
- TNIP1 1
- TOM1 2
- TSPAN14 1
- TUBGCP3 1
- UBA1 5
- UNC119 3
- WRAP53 1
- ZC3HC1 1
- ZFP36 1
- ZNF34 1
- ZNF699 1
- GTF3AP5 1
- ITGAL 1
STRs in panel
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Primary immunodeficiency or monogenic inflammatory bowel disease
Gene: PLD4 Red List (low evidence)
PLD4 (phospholipase D family member 4)
EnsemblGeneIds (GRCh38): ENSG00000166428
EnsemblGeneIds (GRCh37): ENSG00000166428
PLD4 is in 2 panels
EnsemblGeneIds (GRCh38): ENSG00000166428
EnsemblGeneIds (GRCh37): ENSG00000166428
PLD4 is in 2 panels
1 review
Isaac Machado Azevedo (Independent Researcher)
I don't know
5 patients with biallelic PLD4 loss-of-function (5 distinct genotypes; two recurrent alleles c.602G>A and c.968C>T) causing systemic lupus erythematosus 18, all with proliferative lupus nephritis; abolished single-stranded nucleic acid exonuclease activity with excess TLR7/TLR9 and type I interferon signalling, confirmed functionally and in Pld4-deficient mice. PMID 40931063. The source states 5 patients but does not state a kindred count in the accessible main text. PMID 41073790 is the publisher's Author Correction to the same paper (figure duplications only, no new patients), not an independent report. PMID 25052073 is an independent non-human model (bovine).Created: 6 Oct 2026, 6:07 p.m. | Last Modified: 6 Oct 2026, 6:07 p.m.
Panel Version: 9.109
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Systemic lupus erythematosus 18 (SLE18) (MONDO:1060185)
Publications
Created: 6 Oct 2026, 6:07 p.m.
Last Modified: 6 Oct 2026, 6:07 p.m.
Panel version: 9.109
Last Modified: 6 Oct 2026, 6:07 p.m.
Panel version: 9.109
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Literature
- Clinvar variants
- Variants in PLD4
- Penetrance
- None
- Panels with this gene
History Filter Activity
6 Oct 2026, Gel status: 1
Created, Added New Source, Set mode of inheritance
Achchuthan Shanmugasundram (Genomics England Curator)gene: PLD4 was added gene: PLD4 was added to Primary immunodeficiency or monogenic inflammatory bowel disease. Sources: Literature Mode of inheritance for gene: PLD4 was set to BIALLELIC, autosomal or pseudoautosomal