Primary immunodeficiency or monogenic inflammatory bowel disease
Gene: CORO1AComment on list classification: Changed rating of gene from Red to Green. This gene was rated as Green in v2.208 and incorrectly automatically demoted to Red in v2.209. This was due to a defect in the automatic PanelApp uploading tool when a set of publications was added to the panel with the source ‘Other’, and under certain conditions associated to previous sources listed, resulted in the rating of the gene being automatically changed when it should not have been.Created: 14 Oct 2020, 12:39 p.m. | Last Modified: 14 Oct 2020, 12:39 p.m.
Panel Version: 2.240
The following PubMed IDs were added to gene CORO1A (OMIM gene MIM#605000): 23522482;19097825;25073507. These publications have been associated with the gene by the immunodeficiencies subgroup of the Human Phenotype Ontology Immune Mediated Disorders Consortium (https://hpo-immune-mediated-disorders.groups.io/g/update) in August 2020.Created: 13 Oct 2020, 9:36 a.m. | Last Modified: 13 Oct 2020, 9:36 a.m.
Panel Version: 2.208
Publications
agree with green geneCreated: 17 Sep 2019, 3:18 p.m. | Last Modified: 17 Sep 2019, 3:18 p.m.
Panel Version: 1.94
YES- this is covered on our targeted exomeCreated: 17 Sep 2019, 3:18 p.m. | Last Modified: 17 Sep 2019, 3:18 p.m.
Panel Version: 1.94
Gene rating submitted by Kimberly Gilmour and Austen Worth on behalf of London North GLH for the GMS Immunology specialist test group. As discussed with the GMS Immunology Specialist Test Group during webex call 28th March 2019 and confirmed in follow up email 6th September the Specialist Test Group all agreed there is enough evidence to rate this gene Green.Created: 17 Sep 2019, 3:18 p.m. | Last Modified: 17 Sep 2019, 3:18 p.m.
Panel Version: 1.94
Gene rating submitted by Tracy Briggs, David Gokhale and Abigal Rousseau on behalf of North West GLH for the GMS Immunology specialist test group. As discussed with the GMS Immunology Specialist Test Group during webex call 28th March 2019 and confirmed in follow up email on 20th June the Specialist Test Group all agreed there is enough evidence to rate this gene Green.Created: 17 Sep 2019, 3:18 p.m. | Last Modified: 17 Sep 2019, 3:18 p.m.
Panel Version: 1.94
OriginaI Metadata from IUIS classification table (February, 2018) downloaded 20180614. IUIS Genetic defect (original gene symbol in IUIS download): CORO1A .PanelApp HGNC gene symbol check: CORO1A . IUIS Disease: Coronin-1A deficiency . IUIS Inheritance: AR .T cells: Decreased or normal, responses to PHA may be decreased, .B cells: Normal, .IUIS Other affected cells: N/A. IUIS Associated features: Detectable thymus, EBV. IUIS Major category: Immunodeficiencies affecting cellular and humoral immunity. IUIS Subcategory: T-B+ Severe Combined Immune Deficiency (SCID)Created: 2 Jul 2018, 10:35 a.m.
Original metadata downloaded from ESID Registry. ESID_Gene_original: Coronin-1A, PanelApp HGNC gene symbol check: CORO1A , ESID classification: Main_category/ Sub_category/ PID_Diagnosis Combined immunodeficiencies / Omenn syndrome / Omenn syndromeCreated: 17 Apr 2018, 12:29 p.m.
Original metadata downloaded from ESID Registry. ESID_Gene_original: Coronin-1A, PanelApp HGNC gene symbol check: CORO1A, ESID classification: Main_category/ Sub_category/ PID_Diagnosis Combined immunodeficiencies / Atypical Severe Combined Immunodeficiency (Atypical SCID) / Atypical Severe Combined Immunodeficiency (Atypical SCID); Combined immunodeficiencies / Severe combined immunodeficiency (SCID) / Severe combined immunodeficiency (SCID)Created: 17 Apr 2018, 12:29 p.m.
Original metadata supplied by GRID. GRID Gene Symbol HGNC PanelApp check: CORO1A, GRID_Gene_Symbol: CORO1A, GRID_Transcript_ENS_Community submitted: ENST00000219150, GRID_Transcript_RefSeq: NM_007074.3, GRID_Transcript_ENS_used_on_Production: ENST00000219150Created: 17 Apr 2018, 12:12 p.m.
Comment on list classification: Added by expert reviewer, and rated green by a second reviewer. Established evidence in OMIM.Created: 3 Jun 2016, 12:51 p.m.
Phenotypes
hypogammaglobulinaemia, combined immunodeficiency,
Gene: coro1a has been classified as Green List (High Evidence).
Source Other was added to CORO1A. Publications for gene CORO1A were updated from 23522482; 18836449; 19097825 to 23522482; 19097825; 18836449; 25073507 Rating Changed from Green List (high evidence) to Red List (low evidence)
Source NHS GMS was added to CORO1A.
Source North West GLH was added to CORO1A.
Source London North GLH was added to CORO1A.
2018-07-12 Louise Daugherty (Genomics England Curator) promoted panel to v1.0. Reviews were assessed, and panel was revised according to expert reviews and further in-house curation based on PanelApp guidelines. Previous panels (A- or hypo-gammaglobulinaemia, Congenital neutropaenia, Agranulocytosis, Combined B and T cell defect, Inherited complement deficiency and SCID panels) that were merged with this panel, were checked again for any changes/new reviews prior to versioning of this panel, these merged panels are now retired/made internal.
Phenotypes for gene CORO1A were set to Immunodeficiency 8, Combined immunodeficiency, hypogammaglobulinaemia, combined immunodeficiency, Coronin-1A deficiency, Atypical Severe Combined Immunodeficiency (Atypical SCID), Severe combined immunodeficiency (SCID), Omenn syndrome, Detectable thymus, EBV, Immunodeficiencies affecting cellular and humoral immunity
IUIS Classification February 2018 was added to CORO1A. Panel: Primary immunodeficiency disorders
Victorian Clinical Genetics Services was added to CORO1A. Panel: Primary immunodeficiency disorders
Gene: coro1a has been classified as Green List (High Evidence).
ESID Registry 20171117 was added to CORO1A. Panel: Primary immunodeficiency disorders Phenotypes for gene CORO1A were set to Immunodeficiency 8, Combined immunodeficiency, hypogammaglobulinaemia, combined immunodeficiency, Coronin-1A deficiency, Atypical Severe Combined Immunodeficiency (Atypical SCID), Severe combined immunodeficiency (SCID), Omenn syndrome
Phenotypes for gene CORO1A were set to Immunodeficiency 8, Combined immunodeficiency, hypogammaglobulinaemia, combined immunodeficiency, Coronin-1A deficiency
GRID V2.0 was added to CORO1A. Panel: Primary immunodeficiency disorders Phenotypes for gene CORO1A were set to Immunodeficiency 8, Combined immunodeficiency, hypogammaglobulinaemia, combined immunodeficiency, Coronin-1A deficiency
CORO1A Source: GOSH PID 20171143 was removed from gene: CORO1A
GOSH PID v.8.0 was added to CORO1A. Panel: Primary immunodeficiency disorders
GOSH PID 20171143 was added to CORO1A. Panel: Primary immunodeficiency disorders
CORO1A was added to Primary immunodeficiency disorders panel. Sources: Expert Review Green, Combined B and T cell defect v1.12
CORO1A was created by Louise Daugherty