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Primary immunodeficiency or monogenic inflammatory bowel disease

Gene: NUDCD3

Green List (high evidence)

NUDCD3 (NudC domain containing 3)
EnsemblGeneIds (GRCh38): ENSG00000015676
EnsemblGeneIds (GRCh37): ENSG00000015676
OMIM: 610296, Gene2Phenotype
NUDCD3 is in 1 panel

2 reviews

Eleanor Williams (Genomics England Curator)

Green List (high evidence)

The rating of this gene has been updated to green and the mode of inheritance set to 'BIALLELIC, autosomal or pseudoautosomal' following NHS Genomic Medicine Service approval.
Created: 26 Sep 2024, 3:34 p.m. | Last Modified: 26 Sep 2024, 3:34 p.m.
Panel Version: 6.10

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Achchuthan Shanmugasundram (Genomics England Curator)

Green List (high evidence)

Comment on list classification: Although all four unrelated families harboured the same variant, there is functional evidence available for this variant. Hence, this gene can be promoted to green rating in the next GMS update.
Created: 26 Jun 2024, 8:12 p.m. | Last Modified: 26 Jun 2024, 8:14 p.m.
Panel Version: 5.5
PMID:38787962 reported 11 patients across four consanguineous kindreds with a single deleterious missense variant in NUDCD3 gene in homozygous state. Two infants had severe combined immunodeficiency with the complete absence of T and B cells), whereas nine showed classical features of Omenn syndrome.

Patient cells showed reduced expression of NUDCD3 protein and diminished ability to support RAG-mediated recombination in vitro. Although impaired V(D)J recombination in a mouse model bearing the homologous variant led to milder immunologic abnormalities, NUDCD3 is absolutely required for healthy T and B cell development in humans.

This gene has not yet been associated with any phenotypes either in OMIM or in Gene2Phenotype.
Sources: Literature
Created: 26 Jun 2024, 7:49 p.m.

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
severe combined immunodeficiency, MONDO:0015974; Omenn syndrome, MONDO:0011338

Publications

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
  • Literature
Phenotypes
  • severe combined immunodeficiency, MONDO:0015974
  • Omenn syndrome, MONDO:0011338
Tags
gene-checked
OMIM
610296
Clinvar variants
Variants in NUDCD3
Penetrance
None
Publications
Panels with this gene

History Filter Activity

2 Oct 2024, Gel status: 3

Added Tag

Arina Puzriakova (Genomics England Curator)

Tag gene-checked tag was added to gene: NUDCD3.

26 Sep 2024, Gel status: 3

Removed Tag

Eleanor Williams (Genomics England Curator)

Tag Q2_24_promote_green was removed from gene: NUDCD3.

26 Sep 2024, Gel status: 3

Added New Source, Added New Source, Status Update

Eleanor Williams (Genomics England Curator)

Source NHS GMS was added to NUDCD3. Source Expert Review Green was added to NUDCD3. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)

26 Jun 2024, Gel status: 2

Entity classified by Genomics England curator

Achchuthan Shanmugasundram (Genomics England Curator)

Gene: nudcd3 has been classified as Amber List (Moderate Evidence).

26 Jun 2024, Gel status: 1

Added Tag

Achchuthan Shanmugasundram (Genomics England Curator)

Tag Q2_24_promote_green tag was added to gene: NUDCD3.

26 Jun 2024, Gel status: 1

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes

Achchuthan Shanmugasundram (Genomics England Curator)

gene: NUDCD3 was added gene: NUDCD3 was added to Primary immunodeficiency or monogenic inflammatory bowel disease. Sources: Literature Mode of inheritance for gene: NUDCD3 was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: NUDCD3 were set to 38787962 Phenotypes for gene: NUDCD3 were set to severe combined immunodeficiency, MONDO:0015974; Omenn syndrome, MONDO:0011338 Review for gene: NUDCD3 was set to GREEN