Primary immunodeficiency or monogenic inflammatory bowel disease
Gene: STAT5AEnsemblGeneIds (GRCh38): ENSG00000126561
EnsemblGeneIds (GRCh37): ENSG00000126561
OMIM: 601511, Gene2Phenotype
STAT5A is in 2 panels
3 reviews
Sophie Hambleton (Newcastle University)
Not associated with primary immunodeficiencyCreated: 29 Jun 2018, 3:26 p.m.
Eleanor Williams (Genomics England Curator)
No association of this gene in OMIM with any disorders in human. From studies in mice, Yao et al. (2006) (PMID: 16418296) found that Stat5 -/- mice (Stat5a and Stat5b deleted) died before or shortly after birth. Examination of day-18.5 Stat5 -/- embryos showed a severe combined immunodeficiency. No evidence of disease association in Gene2PhenotypeCreated: 2 May 2018, 10:06 a.m.
Publications
Louise Daugherty (Genomics England Curator)
Comment on list classification: Changed from Amber to Red, no published cases of immunodeficiency to date. Red review from external expert review. Referred back to Victorian Clinical Genetics Services for evidences.Created: 5 Jul 2018, 12:40 p.m.
This gene was absent from the original PanelApp PID panel dataset (review April 2018). However it was listed in external expert immunodeficiency diagnostic gene list(s)
GOSH or GRID. In this combined PID panel, this gene has been rated as AMBER and needs further curational review to assess pertinence prior to v1.Created: 19 Apr 2018, 2:08 p.m.
Original metadata downloaded from ESID Registry. ESID_Gene_original: STAT5, PanelApp HGNC gene symbol check: STAT5A, ESID classification: Main_category/ Sub_category/ PID_Diagnosis Combined immunodeficiencies / Combined immunodeficiency (CID) / Combined immunodeficiency; Combined immunodeficiencies / Combined immunodeficiency (CID) / Combined immunodeficiency; Phagocytic disorders / Defects with susceptibility to mycobacterial infection (MSMD) / Defects with susceptibility to mycobacterial infection (MSMD)Created: 17 Apr 2018, 12:29 p.m.
Details
- Mode of Inheritance
- Unknown
- Sources
-
- Expert Review Red
- ESID Registry 20171117
- GOSH PID v.8.0
- Phenotypes
-
- Combined immunodeficiency
- Defects with susceptibility to mycobacterial infection (MSMD)
- OMIM
- 601511
- Clinvar variants
- Variants in STAT5A
- Penetrance
- None
- Publications
- Panels with this gene
History Filter Activity
Panel promoted to version 1.0
Louise Daugherty (Genomics England Curator)2018-07-12 Louise Daugherty (Genomics England Curator) promoted panel to v1.0. Reviews were assessed, and panel was revised according to expert reviews and further in-house curation based on PanelApp guidelines. Previous panels (A- or hypo-gammaglobulinaemia, Congenital neutropaenia, Agranulocytosis, Combined B and T cell defect, Inherited complement deficiency and SCID panels) that were merged with this panel, were checked again for any changes/new reviews prior to versioning of this panel, these merged panels are now retired/made internal.
Entity classified by Genomics England curator
Louise Daugherty (Genomics England Curator)Gene: stat5a has been classified as Red List (Low Evidence).
Set publications
Louise Daugherty (Genomics England Curator)Publications for gene: STAT5A were set to 16418296
Entity classified by Genomics England curator
Louise Daugherty (Genomics England Curator)Gene: stat5a has been classified as Red List (Low Evidence).
Gene classified by Genomics England curator
Louise Daugherty (Genomics England Curator)This gene has been classified as Amber List (Moderate Evidence).
Added New Source, Set penetrance
Louise Daugherty (Genomics England Curator)ESID Registry 20171117 was added to STAT5A. Panel: Primary immunodeficiency disorders Phenotypes for gene STAT5A were set to Combined immunodeficiency, Defects with susceptibility to mycobacterial infection (MSMD)
Clear Sources
Louise Daugherty (Genomics England Curator)STAT5A Source: GOSH PID 20171196 was removed from gene: STAT5A
Added New Source
Louise Daugherty (Genomics England Curator)GOSH PID v.8.0 was added to STAT5A. Panel: Primary immunodeficiency disorders
Added New Source
Louise Daugherty (Genomics England Curator)STAT5A was added to Primary immunodeficiency disorders panel. Sources: GOSH PID 20171196
Created
Louise Daugherty (Genomics England Curator)STAT5A was created by Louise Daugherty