Childhood solid tumours
Gene: BAP1EnsemblGeneIds (GRCh38): ENSG00000163930
EnsemblGeneIds (GRCh37): ENSG00000163930
OMIM: 603089, Gene2Phenotype
BAP1 is in 11 panels
2 reviews
Arina Puzriakova (Genomics England Curator)
The rating of this gene has been updated to Green and the mode of inheritance set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted following NHS Genomic Medicine Service approval.Created: 6 Dec 2024, 10:34 a.m. | Last Modified: 6 Dec 2024, 10:34 a.m.
Panel Version: 4.20
Comment on list classification: Well-established tumour suppressor gene associated with a variety of tumors, including benign melanocytic tumors as well as several malignant tumors, including uveal melanoma, cutaneous melanoma, malignant mesothelioma on exposure to asbestos, and other cancer types, such as lung adenocarcinoma, meningioma, and renal cell carcinoma.
Onset is typically in adulthood but following specialist review, it was agreed that it is appropriate to include the BAP1 gene on this panel. Rare paediatric cases are reported, as reviewed by Terri McVeigh (The Royal Marsden NHS).Created: 9 Jan 2024, 11:48 a.m. | Last Modified: 9 Jan 2024, 11:50 a.m.
Panel Version: 4.12
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Terri McVeigh (Royal Marsden NHS Foundation Trust)
Discussed at UKCGG/cancer leads meeting 06/07/2023 - agreed reasonable to include on panel
Sources: Expert ReviewCreated: 20 Dec 2023, 8:58 a.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
uveal melanoma; mesothelioma; cholangiocarcioma; cutaneous melanoma; renal cell carcinoma; meningioma
Publications
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
- Sources
-
- NHS GMS
- Expert Review Green
- Phenotypes
-
- Tumor predisposition syndrome 1, OMIM:614327
- {Uveal melanoma, susceptibility to, 2}, OMIM:606661
- OMIM
- 603089
- Clinvar variants
- Variants in BAP1
- Penetrance
- Incomplete
- Publications
- Panels with this gene
-
- Adult solid tumours for rare disease
- BAP1 associated tumour predisposition syndrome
- Intellectual disability
- Early onset or syndromic epilepsy
- Childhood solid tumours
- DDG2P
- Adult solid tumours cancer susceptibility
- Melanoma pertinent cancer susceptibility
- Inherited renal cancer
- Familial melanoma
- Pigmentary skin disorders
History Filter Activity
Removed Tag, Removed Tag
Arina Puzriakova (Genomics England Curator)Tag Q4_23_promote_green was removed from gene: BAP1. Tag Q4_23_NHS_review was removed from gene: BAP1.
Added New Source, Added New Source, Status Update
Arina Puzriakova (Genomics England Curator)Source Expert Review Green was added to BAP1. Source NHS GMS was added to BAP1. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)
Entity classified by Genomics England curator
Arina Puzriakova (Genomics England Curator)Gene: bap1 has been classified as Amber List (Moderate Evidence).
Added Tag, Added Tag
Arina Puzriakova (Genomics England Curator)Tag Q4_23_promote_green tag was added to gene: BAP1. Tag Q4_23_NHS_review tag was added to gene: BAP1.
Set Phenotypes
Arina Puzriakova (Genomics England Curator)Phenotypes for gene: BAP1 were changed from uveal melanoma; mesothelioma; cholangiocarcioma; cutaneous melanoma; renal cell carcinoma; meningioma to Tumor predisposition syndrome 1, OMIM:614327; {Uveal melanoma, susceptibility to, 2}, OMIM:606661
Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes, Set penetrance
Terri McVeigh (Royal Marsden NHS Foundation Trust)gene: BAP1 was added gene: BAP1 was added to Childhood solid tumours. Sources: Expert Review Mode of inheritance for gene: BAP1 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: BAP1 were set to 23552620; 30517737; 31382694; https://doi.org/10.1016/j.ejcped.2023.100023; 29981911 Phenotypes for gene: BAP1 were set to uveal melanoma; mesothelioma; cholangiocarcioma; cutaneous melanoma; renal cell carcinoma; meningioma Penetrance for gene: BAP1 were set to Incomplete Review for gene: BAP1 was set to GREEN