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Intellectual disability

Gene: VPS33A

Amber List (moderate evidence)

VPS33A (VPS33A, CORVET/HOPS core subunit)
EnsemblGeneIds (GRCh38): ENSG00000139719
EnsemblGeneIds (GRCh37): ENSG00000139719
OMIM: 610034, Gene2Phenotype
VPS33A is in 5 panels

1 review

Sarah Leigh (Genomics England Curator)

Green List (high evidence)

Comment on publications: PMID: 39273517 was identified by the Genomics England Applied Machine Learning (ML) team in a Biocuration-ML project for identifying new gene-disease associations using Natural Language Processing (NLP) and Generative AI techniques.
Created: 25 Mar 2025, 11:17 a.m. | Last Modified: 25 Mar 2025, 11:17 a.m.
Panel Version: 8.196
There are numerous reports of the homozygous VPS33A variant: NM 022916.5: c.1492C > T, p.Arg498Trp in cases of Mucopolysaccharidosis-plus syndrome (OMIM:617303)(PMID: 27547915;28013294;31070736;39273517). Common features of this syndrome include: hepatomegaly, splenomegaly, respiratory difficulties, developmental delay including limited cognitive abilities and various skeletal issues (PMID: 27547915;28013294;31070736;39273517).
Sources: Literature
Created: 25 Mar 2025, 11:11 a.m.

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Mucopolysaccharidosis-plus syndrome, OMIM:617303; mucopolysaccharidosis-plus syndrome, MONDO:0015012

Publications

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Mucopolysaccharidosis-plus syndrome, OMIM:617303
  • mucopolysaccharidosis-plus syndrome, MONDO:0015012
Tags
Q1_25_ promote_green
OMIM
610034
Clinvar variants
Variants in VPS33A
Penetrance
None
Publications
Panels with this gene

History Filter Activity

25 Mar 2025, Gel status: 2

Set publications

Sarah Leigh (Genomics England Curator)

Publications for gene: VPS33A were set to 27547915; 28013294; 31070736; 39273517

25 Mar 2025, Gel status: 2

Entity classified by Genomics England curator

Sarah Leigh (Genomics England Curator)

Gene: vps33a has been classified as Amber List (Moderate Evidence).

25 Mar 2025, Gel status: 1

Created, Added New Source, Added Tag, Set mode of inheritance, Set publications, Set Phenotypes

Sarah Leigh (Genomics England Curator)

gene: VPS33A was added gene: VPS33A was added to Intellectual disability. Sources: Literature Q1_25_ promote_green tags were added to gene: VPS33A. Mode of inheritance for gene: VPS33A was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: VPS33A were set to 27547915; 28013294; 31070736; 39273517 Phenotypes for gene: VPS33A were set to Mucopolysaccharidosis-plus syndrome, OMIM:617303; mucopolysaccharidosis-plus syndrome, MONDO:0015012 Review for gene: VPS33A was set to GREEN