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Intellectual disability

Gene: VPS41

Green List (high evidence)
VPS41 (VPS41, HOPS complex subunit)
EnsemblGeneIds (GRCh38): ENSG00000006715
EnsemblGeneIds (GRCh37): ENSG00000006715
OMIM: 605485, Gene2Phenotype
VPS41 is in 5 panels

3 reviews

Sarah Leigh (Genomics England Curator)

The rating of this gene has been updated following NHS Genomic Medicine Service approval.
Created: 14 Mar 2022, 2:22 p.m. | Last Modified: 14 Mar 2022, 2:22 p.m.
Panel Version: 3.1519
Created: 14 Mar 2022, 2:22 p.m.
Last Modified: 14 Mar 2022, 2:22 p.m.
Panel version: 3.1519

Arina Puzriakova (Genomics England Curator)

Green List (high evidence)

Comment on list classification: New gene added by Zornitza Stark (Australian Genomics). There is sufficient evidence to promote this gene to Green at the next GSM panel update.
Created: 14 Jun 2021, 3:15 p.m. | Last Modified: 14 Jun 2021, 3:15 p.m.
Panel Version: 1.128
At least 13 individuals from 8 unrelated families (PMIDs: 32808683; 33764426; 33851776) with biallelic variants in VPS41 (7 different variants reported). All affected individuals developed cognitive impairment (GDD/ID) and dystonia, and most also had hypotonia, ataxia, and cerebellar atrophy/hypoplasia. Supported by functional data showing that variants lead to lysosomal dysfunction.
Created: 14 Jun 2021, 3:08 p.m. | Last Modified: 14 Jun 2021, 3:08 p.m.
Panel Version: 1.127

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Publications

Created: 14 Jun 2021, 3:08 p.m.
Last Modified: 14 Jun 2021, 3:08 p.m.
Copied from panel: Childhood onset dystonia or chorea or related movement disorder v1.130

Zornitza Stark (Australian Genomics)

Green List (high evidence)

PMID 33764426: Additional 9 individuals from 5 unrelated families reported.
Created: 10 May 2021, 10:12 a.m. | Last Modified: 10 May 2021, 10:12 a.m.
Panel Version: 1.100
Single individual reported with homozygous canonical splice site variant resulting in exon 7 skipping, and global developmental delay and generalized dystonia. He attained a few words and voluntary limb movements but never sat unsupported. He had pale optic discs and an axonal neuropathy. From 6 years of age, his condition began to deteriorate, with reduced motor abilities and alertness. An MRI of the brain showed atrophy of the superior cerebellar vermis and slimming of the posterior limb of the corpus callosum. VPS41 is component of the HOPS complex and other genes in the complex have been implicated in movement disorders.
Sources: Literature
Created: 2 Nov 2020, 9:40 a.m.

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Dystonia; intellectual disability

Publications

Variants in this GENE are reported as part of current diagnostic practice

Created: 2 Nov 2020, 9:40 a.m.

Copied from panel: Childhood onset dystonia or chorea or related movement disorder v1.130

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Dystonia
  • Intellectual disability
OMIM
605485
Clinvar variants
Variants in VPS41
Penetrance
None
Publications
Panels with this gene

History Filter Activity

14 Mar 2022, Gel status: 3

Removed Tag

Ivone Leong (Genomics England Curator)

Tag Q2_21_rating was removed from gene: VPS41.

14 Mar 2022, Gel status: 3

Added New Source, Status Update

Ivone Leong (Genomics England Curator)

Source Expert Review Green was added to VPS41. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)

14 Jun 2021, Gel status: 2

Created, Added New Source, Added Tag, Set mode of inheritance, Set publications, Set Phenotypes

Arina Puzriakova (Genomics England Curator)

gene: VPS41 was added gene: VPS41 was added to Intellectual disability. Sources: Literature,Expert Review Amber Q2_21_rating tags were added to gene: VPS41. Mode of inheritance for gene: VPS41 was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: VPS41 were set to 32808683; 33764426; 33851776 Phenotypes for gene: VPS41 were set to Dystonia; Intellectual disability